Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 9.4e-101 371.3 182 100.0
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 2.2e-89 333.6 181 91.2
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 7.7e-87 325.1 182 89.6
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 1.5e-74 284.3 183 80.3
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 8.3e-65 251.9 181 72.4
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 1.6e-63 247.7 221 62.0
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 7.8e-47 192.2 124 77.4
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 2.1e-23 114.4 124 47.6
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 2.7e-23 114.0 177 41.8
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 2.8e-20 104.0 125 47.2
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 3.1e-19 100.5 126 45.2
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 3.1e-19 100.5 126 46.8
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 4.0e-19 100.1 125 47.2
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 4.0e-19 100.1 125 47.2
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 5.8e-18 96.3 187 35.8
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 9.9e-18 95.5 126 42.9
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 2.9e-17 94.0 158 36.1
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 2.9e-17 94.0 172 33.7
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 4.9e-17 93.2 161 41.0
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 4.9e-17 93.2 134 41.8
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 6.4e-17 92.8 128 41.4
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.4e-16 91.7 132 41.7
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 2.4e-16 90.9 134 40.3
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 2.4e-16 90.9 125 44.8
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 3.2e-16 90.5 129 42.6
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 5.4e-16 89.7 129 45.7
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.6e-15 88.2 127 41.7
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 7.8e-15 85.9 138 38.4
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 3.9e-14 83.6 98 44.9
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 5.1e-14 83.2 155 36.1
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 2.5e-13 80.9 119 39.5
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 1.3e-12 78.6 97 44.3
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 1.3e-12 78.6 130 41.5
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 1.6e-12 78.2 152 34.2
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 4.8e-12 76.6 99 41.4
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 6.2e-12 76.3 102 42.2
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 8.1e-12 75.9 152 32.9
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 1.1e-11 75.5 124 40.3
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 1.4e-11 75.1 125 36.8
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 1.8e-11 74.7 100 39.0
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 2.4e-11 74.3 128 38.3
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 4.0e-11 73.6 103 39.8
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 4.0e-11 73.6 110 38.2
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 6.9e-11 72.8 126 39.7
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 9.0e-11 72.4 100 41.0
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 2.6e-10 70.9 96 40.6
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 2.6e-10 70.9 127 37.8
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 3.4e-10 70.5 154 33.8
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 5.8e-10 69.7 157 31.8
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 9.9e-10 68.9 97 38.1
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 2.9e-09 67.4 94 43.6
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 2.9e-09 67.4 100 35.0
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 4.9e-09 66.6 100 35.0
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 1.1e-08 65.5 99 37.4
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 5.4e-08 63.2 59 50.8
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 7.1e-08 62.8 112 37.5
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 9.3e-08 62.4 152 31.6
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.2e-07 62.0 112 37.5
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 2.1e-07 61.2 65 49.2
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 2.7e-07 60.8 127 31.5
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 3.5e-07 60.5 116 32.8
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 6.0e-07 59.7 109 33.9
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 2.3e-06 57.8 109 33.9
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 3.0e-06 57.4 92 38.0
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 3.9e-06 57.0 105 35.2
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 8.7e-06 55.8 60 46.7


User provided reference genes

Program Settings