Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.3e-154 549.7 281 100.0
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.8e-151 539.3 281 98.2
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 3.2e-124 448.7 288 84.4
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.5e-115 418.7 283 79.2
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 4.1e-111 405.2 283 77.0
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.9e-108 396.4 274 78.8
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 7.9e-107 391.0 202 98.5
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.1e-103 380.6 268 74.3
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.7e-101 373.2 210 89.5
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.9e-98 362.1 278 70.1
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.7e-98 361.3 278 70.5
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 6.7e-98 361.3 256 75.0
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.1e-97 360.5 267 71.5
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 7.4e-97 357.8 280 68.2
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 2.2e-96 356.3 266 71.4
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-95 354.0 270 71.1
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 3.1e-95 352.4 281 68.7
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 6.9e-95 351.3 281 66.5
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 1.2e-94 350.5 269 71.4
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.5e-94 350.1 286 67.5
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.6e-94 349.4 267 68.2
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 2.6e-94 349.4 283 67.5
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 5.9e-94 348.2 268 69.8
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 7.7e-94 347.8 263 70.7
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.3e-93 347.1 267 66.3
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 2.2e-93 346.3 283 66.1
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 2.2e-93 346.3 280 67.9
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.8e-93 345.5 270 66.3
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 6.5e-93 344.7 277 67.5
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.1e-92 344.0 279 67.0
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.4e-92 343.6 234 73.5
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.9e-92 343.2 282 65.2
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.9e-92 343.2 259 68.7
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.5e-92 342.8 214 77.6
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 3.2e-92 342.4 288 66.0
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 7.2e-92 341.3 257 68.9
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 9.4e-92 340.9 265 69.1
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.2e-91 340.5 270 67.4
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.1e-91 339.7 225 75.6
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.1e-91 339.7 262 68.7
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 2.7e-91 339.3 262 68.7
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.7e-91 338.6 261 67.8
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 6.1e-91 338.2 249 70.7
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.1e-91 338.2 259 70.7
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.0e-90 335.9 282 65.6
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 3.0e-90 335.9 201 84.1
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 3.9e-90 335.5 270 65.6
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 2.0e-89 333.2 249 68.3
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 4.4e-89 332.0 210 79.0
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 7.4e-89 331.3 281 65.1
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 4.8e-88 328.6 277 64.6
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 4.8e-88 328.6 264 66.3
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 4.8e-88 328.6 280 64.6
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.4e-87 327.0 270 67.0
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.4e-87 327.0 251 67.3
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.2e-86 323.9 277 63.5
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 4.5e-86 322.0 265 64.5
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 5.9e-86 321.6 279 65.6
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 7.7e-86 321.2 202 80.2
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 7.7e-86 321.2 282 61.3
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.0e-85 320.9 202 80.7
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 2.9e-85 319.3 263 63.9
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 5.0e-85 318.5 265 64.5
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 5.0e-85 318.5 265 64.5
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.9e-84 316.6 216 75.0
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.9e-84 316.6 274 63.9
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.5e-84 316.2 246 69.1
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 3.2e-84 315.8 258 64.0
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.2e-84 315.5 234 69.7
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 7.2e-84 314.7 251 67.7
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.2e-84 314.7 289 62.3
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 9.4e-84 314.3 209 73.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.2e-83 313.9 203 77.8
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 2.7e-83 312.8 277 62.8
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 3.6e-83 312.4 253 67.6
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 8.0e-83 311.2 201 77.1
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.0e-82 310.8 274 60.2
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.4e-82 310.5 246 66.7
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 6.7e-82 308.1 244 66.8
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 6.7e-82 308.1 234 67.1
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 6.7e-82 308.1 204 76.0
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 8.8e-82 307.8 265 63.4
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.2e-81 307.4 214 72.9
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.7e-81 305.1 281 59.1
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 5.7e-81 305.1 242 65.7
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 7.5e-81 304.7 244 66.0
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 7.5e-81 304.7 244 66.0
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 7.5e-81 304.7 204 75.0
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.2e-80 303.1 204 73.5
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 4.8e-80 302.0 204 73.0
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 8.2e-80 301.2 182 83.0
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 8.2e-80 301.2 245 64.1
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 2.4e-79 299.7 203 72.9
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.4e-79 299.7 258 61.2
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 5.3e-79 298.5 248 64.9
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.0e-79 298.1 226 68.1
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 9.1e-79 297.7 204 72.5
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 3.5e-78 295.8 248 64.5
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.7e-77 293.5 202 71.3
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.7e-77 293.5 186 79.6
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.9e-77 292.7 253 64.8
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.0e-77 292.0 254 64.2
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 5.0e-77 292.0 193 75.1
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 8.5e-77 291.2 273 61.9
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.9e-76 290.0 227 64.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.2e-76 289.3 283 60.1
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 7.2e-76 288.1 280 61.4
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 2.7e-75 286.2 258 57.4
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 8.0e-75 284.6 165 86.7
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 8.0e-75 284.6 165 86.7
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.0e-74 284.3 177 78.5
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 2.3e-74 283.1 263 59.3
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.0e-74 282.3 214 66.4
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.0e-73 280.0 230 63.0
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 2.0e-73 280.0 177 78.5
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 7.5e-73 278.1 201 68.2
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.2e-72 276.6 235 61.3
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.7e-72 275.8 202 68.8
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 4.8e-72 275.4 199 69.8
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 7.0e-71 271.6 262 58.0
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 2.9e-69 266.2 208 62.5
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.1e-68 264.2 224 64.7
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.2e-67 260.8 179 70.4
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 4.7e-67 258.8 184 71.7
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.8e-63 246.9 263 51.7
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 4.1e-63 245.7 263 52.9
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 5.9e-62 241.9 280 53.9
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 2.5e-60 236.5 260 49.2
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 7.3e-60 235.0 171 70.2
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 7.3e-60 235.0 259 53.3
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 3.0e-58 229.6 186 65.6
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 3.0e-53 213.0 243 50.6
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.8e-50 203.8 228 54.4
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 2.0e-49 200.3 192 57.8
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 2.2e-48 196.8 130 71.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 2.7e-46 189.9 111 82.0
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 6.2e-43 178.7 113 77.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.1e-42 177.9 172 53.5
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.2e-41 174.5 198 44.9
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 2.3e-37 160.2 95 83.2
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.6e-33 145.2 88 79.5
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 3.5e-30 136.3 103 66.0
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.0e-29 133.3 210 42.9
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 7.6e-25 118.6 156 39.7
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.3e-24 117.9 70 82.9
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 6.4e-24 115.5 190 40.0
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.4e-23 114.4 212 35.4
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.2e-22 111.3 208 34.6
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 8.7e-21 105.1 111 48.6
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 9.9e-17 91.7 148 37.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 8.4e-16 88.6 111 47.7
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.6e-14 84.3 65 60.0
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 8.7e-13 78.6 66 57.6
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 2.8e-11 73.6 113 42.5
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 6.9e-10 68.9 71 60.6
CAN.G10322.1 Capsicum annuum HOM05D001108 ORTHO05D115629 4.5e-09 66.2 73 52.1
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 7.6e-09 65.5 38 81.6
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 4.9e-08 62.8 152 33.6


User provided reference genes

Program Settings