Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 0.0e+00 1457.2 797 100.0
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 0.0e+00 1361.3 801 92.3
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 0.0e+00 1318.1 797 92.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 0.0e+00 1080.1 886 70.4
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 4.7e-306 1054.3 806 73.7
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.1e-289 998.4 806 71.2
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 3.3e-283 978.4 814 68.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.4e-187 659.4 809 51.2
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 9.5e-182 641.3 695 52.4
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 4.9e-178 629.0 688 53.3
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 3.9e-175 619.4 734 48.2
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.2e-173 614.4 796 48.6
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 6.2e-173 612.1 643 56.1
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.9e-161 573.9 674 48.5
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.5e-158 564.3 799 43.9
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.0e-151 541.6 894 41.4
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.6e-149 534.3 763 44.7
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 6.5e-146 522.3 815 42.1
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.8e-138 496.5 719 43.8
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 8.4e-138 495.4 798 45.7
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 4.2e-137 493.0 752 45.5
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.6e-136 491.1 971 38.0
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.1e-134 485.0 684 43.7
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 9.7e-134 481.9 745 45.9
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 2.6e-131 473.8 774 43.5
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 4.5e-131 473.0 706 42.2
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.9e-129 467.6 773 40.4
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 7.2e-129 465.7 654 44.2
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.6e-128 464.5 714 40.6
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.1e-126 458.4 817 39.3
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.5e-126 458.0 800 42.1
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.5e-126 457.2 796 43.3
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.7e-125 454.5 786 43.8
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 2.2e-125 454.1 786 43.8
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.8e-125 453.0 773 44.9
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 8.2e-125 452.2 683 44.8
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 8.2e-125 452.2 805 43.7
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.7e-122 444.5 835 43.7
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.4e-121 441.4 798 42.4
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 9.4e-121 438.7 842 41.9
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.2e-120 438.3 682 44.0
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.7e-120 437.2 818 41.7
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 6.1e-120 436.0 841 36.6
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 6.1e-120 436.0 802 41.4
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 6.7e-119 432.6 750 42.5
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.1e-118 431.8 915 36.8
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 2.0e-118 431.0 890 39.3
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 5.7e-118 429.5 864 38.2
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 9.4e-113 412.1 846 41.5
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 4.7e-112 409.8 802 38.8
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.0e-111 408.7 824 39.2
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 5.2e-111 406.4 831 40.2
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 8.8e-111 405.6 819 38.7
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.0e-110 404.4 767 39.8
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 4.4e-110 403.3 797 38.1
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 2.2e-109 401.0 778 37.7
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 4.1e-108 396.7 768 37.2
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.2e-107 395.2 750 39.3
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 2.0e-107 394.4 833 37.9
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 5.0e-106 389.8 783 37.2
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 5.0e-106 389.8 839 36.8
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.5e-105 388.3 676 38.6
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.5e-105 388.3 808 37.0
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 9.4e-105 385.6 814 37.3
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.2e-104 385.2 696 38.1
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.3e-103 380.9 845 36.9
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 3.0e-103 380.6 839 37.2
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 8.8e-103 379.0 697 38.2
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 7.5e-102 375.9 937 33.3
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 2.2e-101 374.4 864 35.0
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.4e-100 371.7 677 38.3
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.4e-100 371.7 764 38.5
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 2.4e-100 370.9 717 37.2
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 2.4e-100 370.9 698 38.1
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 7.0e-100 369.4 701 39.9
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 9.1e-100 369.0 703 40.1
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 9.1e-100 369.0 723 40.2
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 2.0e-99 367.9 783 33.8
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.0e-99 367.9 818 34.6
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.5e-99 366.7 596 39.1
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 7.7e-99 365.9 727 36.7
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 2.2e-98 364.4 771 36.4
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 8.5e-98 362.5 965 33.4
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 3.0e-95 354.0 819 35.3
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.6e-94 350.9 832 36.3
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.1e-92 345.5 854 32.7
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.4e-92 344.4 831 32.9
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 9.2e-92 342.4 812 35.5
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 4.5e-91 340.1 727 36.7
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 5.9e-91 339.7 718 36.6
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.0e-90 339.0 711 36.3
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.0e-90 339.0 680 37.1
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.0e-90 339.0 715 34.8
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.3e-90 338.6 868 36.2
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.7e-90 338.2 711 36.3
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 3.8e-90 337.0 689 34.1
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 2.5e-89 334.3 893 32.1
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-88 332.0 738 36.4
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 4.7e-88 330.1 733 39.6
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.4e-87 328.6 675 35.1
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.8e-87 328.2 790 33.7
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.2e-86 325.5 708 35.0
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 9.2e-84 315.8 775 34.3
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.3e-82 312.0 641 41.0
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 2.3e-82 311.2 914 28.6
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.0e-82 310.8 672 38.2
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 3.9e-82 310.5 767 34.3
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.9e-81 308.1 934 27.9
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.0e-75 286.6 755 32.6
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 3.0e-74 284.3 367 50.7
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 4.4e-70 270.4 685 31.4
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.5e-62 245.4 768 28.3
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 4.6e-59 233.8 595 32.6
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.8e-59 233.0 803 29.9
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.7e-58 231.9 747 27.8
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 4.7e-56 223.8 310 45.5
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 5.2e-55 220.3 276 49.3
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 2.9e-53 214.5 439 43.7
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.3e-50 205.7 276 42.0
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 4.5e-46 190.7 271 45.4
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 2.1e-43 181.8 496 32.3
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 4.6e-43 180.6 174 51.7
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.6e-41 172.9 179 50.3
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.3e-40 172.6 231 41.6
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.4e-39 169.1 671 25.8
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 2.6e-38 164.9 153 57.5
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 4.3e-33 147.5 151 53.6
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 1.2e-30 139.4 227 41.4
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.0e-26 126.3 147 49.7
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 3.9e-26 124.4 272 32.7
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.1e-23 116.3 165 38.8
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.0e-21 109.8 200 35.5
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 1.1e-20 106.3 65 76.9
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 5.5e-20 104.0 775 24.0
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 5.1e-18 97.4 336 26.8
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 2.8e-16 91.7 335 26.9
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 5.0e-13 80.9 215 30.7
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 4.6e-11 74.3 75 54.7
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.4e-07 62.8 92 38.0
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 9.1e-07 60.1 63 54.0
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 9.1e-07 60.1 62 51.6


User provided reference genes

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