Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 4.7e-49 197.6 103 100.0
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.4e-48 196.1 103 99.0
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.4e-48 196.1 103 99.0
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.6e-47 191.8 103 95.1
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 2.6e-47 191.8 103 95.1
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 7.5e-47 190.3 103 94.2
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.7e-46 189.1 103 93.2
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 2.9e-46 188.3 103 93.2
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 3.2e-45 184.9 102 90.2
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 7.8e-44 180.3 98 91.8
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.9e-42 175.6 103 86.4
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 1.4e-40 169.5 102 82.4
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.3e-40 168.7 103 82.5
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 4.0e-40 167.9 103 82.5
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 3.4e-39 164.9 102 78.4
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 4.4e-39 164.5 102 78.4
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 3.7e-38 161.4 103 78.6
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 3.7e-38 161.4 101 78.2
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 4.9e-38 161.0 102 78.4
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.4e-38 160.6 102 78.4
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 6.4e-38 160.6 102 76.5
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 6.4e-38 160.6 100 81.0
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 1.1e-37 159.8 103 75.7
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 1.4e-37 159.5 103 77.7
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 1.4e-37 159.5 102 77.5
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 1.9e-37 159.1 103 75.7
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 2.4e-37 158.7 103 77.7
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 2.4e-37 158.7 99 79.8
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.4e-37 158.7 98 81.6
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 3.2e-37 158.3 102 77.5
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 3.2e-37 158.3 103 78.6
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 4.1e-37 157.9 103 76.7
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 4.1e-37 157.9 103 75.7
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 5.4e-37 157.5 100 79.0
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 5.4e-37 157.5 103 76.7
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 9.2e-37 156.8 101 76.2
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 76.7
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 1.2e-36 156.4 102 75.5
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.2e-36 156.4 97 78.4
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 2.1e-36 155.6 99 78.8
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 2.1e-36 155.6 103 74.8
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 2.7e-36 155.2 103 75.7
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 4.6e-36 154.5 103 71.8
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 6.0e-36 154.1 100 75.0
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 72.8
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 75.7
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 7.8e-36 153.7 100 77.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 7.8e-36 153.7 100 77.0
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 7.8e-36 153.7 103 72.8
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.3e-35 152.9 103 72.8
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.7e-35 152.5 102 74.5
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 73.8
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 2.3e-35 152.1 103 73.8
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 2.3e-35 152.1 103 74.8
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 5.1e-35 151.0 100 76.0
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 5.1e-35 151.0 103 72.8
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 5.1e-35 151.0 100 73.0
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 5.1e-35 151.0 98 77.6
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 5.1e-35 151.0 102 71.6
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 6.6e-35 150.6 98 77.6
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 8.6e-35 150.2 95 77.9
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 1.1e-34 149.8 98 76.5
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 1.1e-34 149.8 94 78.7
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.5e-34 149.4 98 75.5
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 1.5e-34 149.4 99 72.7
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.9e-34 149.1 98 76.5
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 2.5e-34 148.7 98 74.5
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 2.5e-34 148.7 101 70.3
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.5e-34 148.7 96 74.0
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 4.3e-34 147.9 103 70.9
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 4.3e-34 147.9 103 69.9
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 5.6e-34 147.5 103 69.9
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 70.9
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 7.3e-34 147.1 96 72.9
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 7.3e-34 147.1 96 72.9
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 7.3e-34 147.1 96 72.9
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 69.9
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 69.9
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 7.3e-34 147.1 101 69.3
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 9.5e-34 146.7 98 70.4
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 9.5e-34 146.7 98 73.5
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.2e-33 146.4 100 75.0
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.2e-33 146.4 98 72.4
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 2.1e-33 145.6 94 75.5
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 2.1e-33 145.6 99 72.7
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 4.7e-33 144.4 99 71.7
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 4.7e-33 144.4 98 73.5
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 6.2e-33 144.1 103 68.0
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 6.2e-33 144.1 103 71.8
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 8.1e-33 143.7 103 70.9
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 1.4e-32 142.9 102 67.6
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 67.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 3.1e-32 141.7 100 69.0
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 4.0e-32 141.4 103 67.0
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 4.0e-32 141.4 103 67.0
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 4.0e-32 141.4 103 67.0
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 4.0e-32 141.4 103 67.0
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 4.0e-32 141.4 103 66.0
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 5.2e-32 141.0 102 66.7
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 5.2e-32 141.0 101 68.3
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 5.2e-32 141.0 99 70.7
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 5.2e-32 141.0 99 70.7
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 6.8e-32 140.6 99 68.7
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 8.9e-32 140.2 103 67.0
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 8.9e-32 140.2 103 67.0
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.2e-31 139.8 103 66.0
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 1.2e-31 139.8 100 68.0
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 1.5e-31 139.4 100 67.0
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 1.5e-31 139.4 103 67.0
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 1.5e-31 139.4 100 70.0
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 2.0e-31 139.0 103 67.0
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 2.6e-31 138.7 100 68.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 3.4e-31 138.3 95 69.5
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 4.4e-31 137.9 103 66.0
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 4.4e-31 137.9 103 66.0
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 4.4e-31 137.9 103 66.0
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 9.9e-31 136.7 103 65.0
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 3.7e-30 134.8 101 67.3
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 4.9e-30 134.4 101 67.3
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 1.9e-29 132.5 101 66.3
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 1.9e-29 132.5 101 66.3
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 2.4e-29 132.1 101 66.3
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 3.1e-24 115.2 105 61.0
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.0e-24 114.8 104 61.5
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 6.8e-24 114.0 74 68.9
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.2e-23 113.2 77 66.2
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 2.0e-23 112.5 156 44.2
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.4e-21 105.5 65 73.8
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 4.2e-21 104.8 70 70.0
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 5.4e-21 104.4 68 70.6
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 1.2e-20 103.2 70 68.6
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.6e-20 102.8 70 67.1
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.1e-20 102.4 85 61.2
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 4.6e-20 101.3 68 66.2
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 6.0e-20 100.9 73 64.4
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 4.3e-18 94.7 89 58.4
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 5.6e-18 94.4 88 54.5
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 9.6e-18 93.6 83 55.4
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 3.1e-16 88.6 62 69.4
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 1.7e-14 82.8 103 48.5
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 8.4e-14 80.5 99 51.5
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 2.1e-12 75.9 83 49.4
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 6.0e-12 74.3 54 63.0
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 7.8e-12 73.9 62 54.8
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 3.6e-09 65.1 85 48.2
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 4.8e-09 64.7 75 49.3
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.1e-08 62.0 101 38.6
PRCOL_00000303 Prasinoderma coloniale HOM05D005227 ORTHO05D333637 8.4e-06 53.9 86 36.0


User provided reference genes

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