Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 1.2e-49 199.5 96 100.0
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 4.7e-43 177.6 96 90.6
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 1.7e-40 169.1 86 95.3
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.4e-34 149.4 92 78.3
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 8.9e-34 146.7 87 79.3
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 2.6e-33 145.2 96 68.8
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 4.4e-33 144.4 96 70.8
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.3e-32 142.9 84 81.0
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 1.3e-32 142.9 96 68.8
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 3.7e-32 141.4 84 79.8
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 4.9e-32 141.0 98 68.4
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 6.4e-32 140.6 98 70.4
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 8.3e-32 140.2 96 67.7
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 2.4e-31 138.7 98 66.3
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 2.4e-31 138.7 100 68.0
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 3.2e-31 138.3 98 69.4
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 5.4e-31 137.5 97 66.0
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 7.0e-31 137.1 100 68.0
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 9.2e-31 136.7 98 69.4
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 9.2e-31 136.7 96 64.6
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 9.2e-31 136.7 98 63.3
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.2e-30 136.3 96 64.6
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 2.0e-30 135.6 96 67.7
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 2.7e-30 135.2 94 67.0
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.7e-30 135.2 96 64.6
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 4.6e-30 134.4 95 63.2
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 7.8e-30 133.7 98 64.3
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 7.8e-30 133.7 98 64.3
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 1.0e-29 133.3 95 62.1
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 1.3e-29 132.9 96 65.6
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 1.3e-29 132.9 96 65.6
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.3e-29 132.9 97 63.9
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.7e-29 132.5 98 65.3
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.7e-29 132.5 98 63.3
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 2.3e-29 132.1 99 64.6
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 2.3e-29 132.1 97 64.9
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 3.0e-29 131.7 97 67.0
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 3.0e-29 131.7 97 66.0
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 3.9e-29 131.3 98 64.3
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 3.9e-29 131.3 98 65.3
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 3.9e-29 131.3 98 65.3
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 1.1e-28 129.8 96 64.6
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 2.5e-28 128.6 96 64.6
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 5.6e-28 127.5 96 61.5
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 5.6e-28 127.5 84 69.0
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 7.3e-28 127.1 96 63.5
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 7.3e-28 127.1 96 63.5
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 9.5e-28 126.7 93 63.4
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 9.5e-28 126.7 98 63.3
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 1.2e-27 126.3 96 60.4
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 1.6e-27 125.9 96 60.4
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.1e-27 125.6 98 61.2
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 2.1e-27 125.6 96 60.4
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.6e-27 124.8 98 60.2
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 3.6e-27 124.8 98 60.2
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 3.6e-27 124.8 98 62.2
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 6.2e-27 124.0 95 58.9
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 6.2e-27 124.0 98 60.2
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 6.2e-27 124.0 98 61.2
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 1.1e-26 123.2 96 59.4
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.8e-26 122.5 96 62.5
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 2.3e-26 122.1 97 58.8
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 2.3e-26 122.1 96 60.4
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 4.0e-26 121.3 96 59.4
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 6.8e-26 120.6 96 58.3
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 6.8e-26 120.6 96 60.4
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 6.8e-26 120.6 96 58.3
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 8.9e-26 120.2 96 57.3
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 2.0e-25 119.0 95 61.1
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 2.6e-25 118.6 83 62.7
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.6e-25 118.6 96 56.2
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 2.6e-25 118.6 96 56.2
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 7.5e-25 117.1 95 60.0
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 7.5e-25 117.1 83 62.7
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 7.5e-25 117.1 91 61.5
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 7.5e-25 117.1 85 67.1
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 9.8e-25 116.7 84 64.3
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 9.8e-25 116.7 97 57.7
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 3.7e-24 114.8 96 59.4
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.1e-23 113.2 84 61.9
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 1.9e-23 112.5 84 64.3
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 3.2e-23 111.7 96 58.3
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 3.2e-23 111.7 90 56.7
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 4.1e-23 111.3 86 64.0
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 4.1e-23 111.3 84 63.1
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 4.1e-23 111.3 94 58.5
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 7.1e-23 110.5 84 64.3
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 7.1e-23 110.5 86 58.1
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.6e-22 109.4 90 58.9
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 7.8e-22 107.1 83 65.1
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 1.7e-21 105.9 86 59.3
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 5.1e-21 104.4 132 45.5
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 5.1e-21 104.4 99 53.5
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 8.6e-21 103.6 86 58.1
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 1.5e-20 102.8 82 65.9
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.5e-20 102.8 86 55.8
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.5e-20 102.1 73 61.6
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 3.3e-20 101.7 100 51.0
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 5.6e-20 100.9 102 51.0
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 5.6e-20 100.9 99 52.5
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 7.3e-20 100.5 86 54.7
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 1.2e-19 99.8 101 50.5
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 1.2e-19 99.8 65 67.7
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 2.8e-19 98.6 78 62.8
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 4.7e-19 97.8 84 54.8
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 6.2e-19 97.4 82 54.9
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 6.2e-19 97.4 101 52.5
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 6.2e-19 97.4 95 50.5
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 8.1e-19 97.1 105 52.4
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 1.8e-18 95.9 102 50.0
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 1.8e-18 95.9 64 65.6
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 1.8e-18 95.9 64 65.6
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 1.8e-18 95.9 105 47.6
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 2.3e-18 95.5 104 48.1
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 2.3e-18 95.5 84 52.4
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 3.1e-18 95.1 64 64.1
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 4.0e-18 94.7 96 50.0
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 5.8e-17 90.9 81 56.8
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 7.6e-17 90.5 73 58.9
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 8.3e-16 87.0 86 50.0
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 1.1e-15 86.7 58 69.0
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.4e-15 86.3 73 56.2
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 7.3e-12 73.9 87 42.5
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 7.3e-12 73.9 87 42.5
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 2.8e-11 72.0 68 51.5
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 3.6e-11 71.6 57 61.4
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 2.4e-10 68.9 57 59.6
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 3.1e-10 68.6 60 51.7
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 4.0e-10 68.2 53 52.8
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 8.9e-10 67.0 49 57.1
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 3.8e-08 61.6 41 63.4
CBR_g25869 Chara braunii HOM05D005781 ORTHO05D006835 2.1e-06 55.8 85 35.3


User provided reference genes

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