Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 3.6e-79 298.5 187 100.0
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 6.1e-71 271.2 149 92.6
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 3.2e-64 248.8 146 89.0
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 1.1e-48 197.2 153 74.5
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 7.0e-43 177.9 147 68.7
Nitab4.5_0001176g0060 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.8e-41 172.2 149 67.8
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 1.4e-38 163.7 142 65.5
Peaxi162Scf00462g00005 Petunia axillaris HOM05D002846 ORTHO05D002692 2.0e-37 159.8 146 65.1
Nitab4.5_0002083g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.7e-36 155.6 146 63.7
Nitab4.5_0001884g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.9e-33 145.6 145 59.3
PGSC0003DMG400005270 Solanum tuberosum HOM05D002846 ORTHO05D002692 7.3e-32 141.4 136 61.8
Nitab4.5_0000006g0090 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.6e-31 140.2 151 57.0
Sopen05g027000 Solanum pennellii HOM05D002846 ORTHO05D002692 2.1e-31 139.8 136 61.0
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.2e-29 134.0 135 62.2
PGSC0003DMG400008737 Solanum tuberosum HOM05D002846 ORTHO05D002692 1.6e-26 123.6 141 58.9
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 2.7e-26 122.9 143 58.0
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 6.0e-26 121.7 151 56.3
Nitab4.5_0015723g0010 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.3e-24 115.9 140 52.9
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 2.0e-21 106.7 150 52.0
Oeu041933.1 Olea europaea HOM05D002846 ORTHO05D002692 2.9e-20 102.8 153 48.4
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 1.1e-19 100.9 141 48.2
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 2.4e-19 99.8 152 48.7
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 4.1e-19 99.0 150 47.3
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 1.2e-18 97.4 142 42.3
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 1.6e-18 97.1 141 46.1
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 4.6e-18 95.5 142 44.4
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 4.6e-18 95.5 142 45.8
Phvul.011G105200 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 7.8e-18 94.7 151 41.7
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 1.3e-17 94.0 139 43.2
Lalb_Chr19g0135751 Lupinus albus HOM05D002846 ORTHO05D002692 3.0e-17 92.8 141 42.6
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 3.0e-17 92.8 145 47.6
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 1.1e-16 90.9 154 43.5
Oeu027251.1 Olea europaea HOM05D002846 ORTHO05D002692 1.5e-16 90.5 150 42.7
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 1.9e-16 90.1 142 47.2
Glyma.06G303502 Glycine max HOM05D002846 ORTHO05D002692 1.9e-16 90.1 142 43.7
Ca_26241_v3 Cicer arietinum L. HOM05D002846 ORTHO05D002692 3.3e-16 89.4 143 43.4
Prupe.3G218700 Prunus persica HOM05D002846 ORTHO05D002692 4.3e-16 89.0 149 44.3
Lj3g0002811 Lotus japonicus HOM05D002846 ORTHO05D002692 5.6e-16 88.6 146 42.5
Glyma.12G100400 Glycine max HOM05D002846 ORTHO05D002692 9.5e-16 87.8 142 43.0
TAR626G0168 Trochodendron aralioides HOM05D002846 ORTHO05D002692 9.5e-16 87.8 148 43.9
HanXRQChr15g0496381 Helianthus annuus HOM05D002846 ORTHO05D002692 2.8e-15 86.3 133 46.6
SalBow1G8286 Salvia bowleyana HOM05D002846 ORTHO05D002692 2.8e-15 86.3 141 44.0
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 2.8e-15 86.3 151 46.4
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 3.6e-15 85.9 141 41.8
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 3.6e-15 85.9 145 44.8
MSTRG.14152 Avicennia marina HOM05D002846 ORTHO05D002692 4.7e-15 85.5 141 48.2
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 4.7e-15 85.5 150 41.3
MSTRG.12286 Avicennia marina HOM05D002846 ORTHO05D002692 6.2e-15 85.1 138 47.8
VMungo0971G0001 Vigna mungo HOM05D002846 ORTHO05D002692 6.2e-15 85.1 151 39.7
TWI36G0639 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 8.1e-15 84.7 139 43.9
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 8.1e-15 84.7 148 42.6
FAN14G0905 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.1e-14 84.3 131 45.8
Oeu036754.1 Olea europaea HOM05D002846 ORTHO05D002692 1.4e-14 84.0 150 40.7
VMungo1080G0378 Vigna mungo HOM05D002846 ORTHO05D002692 1.8e-14 83.6 153 40.5
Migut.H01224 Erythranthe guttata HOM05D002846 ORTHO05D002692 2.3e-14 83.2 146 41.8
FvH4_6g43420 Fragaria vesca HOM05D002846 ORTHO05D002692 2.3e-14 83.2 131 45.8
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 4.0e-14 82.4 136 46.3
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 5.2e-14 82.0 136 46.3
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 6.8e-14 81.6 153 41.8
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 6.8e-14 81.6 150 42.7
COL.COLO4_27687 Corchorus olitorius HOM05D002846 ORTHO05D002692 1.5e-13 80.5 155 43.2
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.5e-13 80.5 131 45.0
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 2.0e-13 80.1 142 41.5
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 2.6e-13 79.7 160 40.0
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 2.6e-13 79.7 140 43.6
FAN02G4078 Fragaria x ananassa HOM05D002846 ORTHO05D002692 4.4e-13 79.0 131 44.3
Lsat_1_v5_gn_8_128540 Lactuca sativa HOM05D002846 ORTHO05D002692 5.8e-13 78.6 136 41.9
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 7.6e-13 78.2 131 45.0
FAN09G0250 Fragaria x ananassa HOM05D002846 ORTHO05D002692 9.9e-13 77.8 135 42.2
Nitab4.5_0000896g0010 Nicotiana tabacum HOM05D002846 ORTHO05D002692 9.9e-13 77.8 77 61.0
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 9.9e-13 77.8 154 39.0
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 4.9e-12 75.5 143 41.3
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 4.9e-12 75.5 150 39.3
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 4.9e-12 75.5 148 45.3
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 8.4e-12 74.7 140 41.4
Hma1.2p1_0249F.1_g102340 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.1e-11 74.3 148 39.9
CSS0028377 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 1.4e-11 73.9 145 40.0
Eucgr.A01716 Eucalyptus grandis HOM05D002846 ORTHO05D002692 1.4e-11 73.9 146 39.7
Sed0000680 Sechium edule HOM05D002846 ORTHO05D002692 2.4e-11 73.2 135 40.0
Lj3g0014799 Lotus japonicus HOM05D002846 ORTHO05D002692 3.2e-11 72.8 156 37.8
PSO675G7460 Papaver somniferum HOM05D002846 ORTHO05D002692 3.2e-11 72.8 174 37.4
CiPaw.03G161600 Carya illinoinensis HOM05D002846 ORTHO05D002692 3.5e-10 69.3 137 40.1
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 3.5e-10 69.3 139 38.8
CsaV3_2G035090 Cucumis sativus L. HOM05D002846 ORTHO05D002692 4.6e-10 68.9 137 41.6
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 4.6e-10 68.9 158 38.0
ClCG02G008550 Citrullus lanatus HOM05D002846 ORTHO05D002692 6.0e-10 68.6 141 39.0
PGR042G0859 Punica granatum HOM05D002846 ORTHO05D002692 7.8e-10 68.2 158 39.9
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 1.0e-09 67.8 132 38.6
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 1.0e-09 67.8 132 38.6
ATR0697G184 Amborella trichopoda HOM05D002846 ORTHO05D002692 1.3e-09 67.4 138 42.8
Gohir.A01G076300 Gossypium hirsutum HOM05D002846 ORTHO05D002692 1.3e-09 67.4 150 41.3
AUR62025052 Chenopodium quinoa HOM05D002846 ORTHO05D002692 1.7e-09 67.0 96 49.0
COL.COLO4_09606 Corchorus olitorius HOM05D002846 ORTHO05D002692 3.0e-09 66.2 138 37.7
MELO3C019247.2 Cucumis melo HOM05D002846 ORTHO05D002692 3.9e-09 65.9 137 40.9
Sc12g0002340 Simmondsia chinensis HOM05D002846 ORTHO05D002692 3.9e-09 65.9 150 36.7
Thecc.07G046400 Theobroma cacao HOM05D002846 ORTHO05D002692 5.1e-09 65.5 140 37.1
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 8.6e-09 64.7 138 43.5
Gohir.D01G063800 Gossypium hirsutum HOM05D002846 ORTHO05D002692 1.1e-08 64.3 150 40.0
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 1.1e-08 64.3 143 37.8
PSO541G2462 Papaver somniferum HOM05D002846 ORTHO05D002692 1.1e-08 64.3 178 36.0
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 1.1e-08 64.3 151 39.7
Gorai.002G084300 Gossypium raimondii HOM05D002846 ORTHO05D002692 1.5e-08 63.9 150 40.7
CiPaw.04G116900 Carya illinoinensis HOM05D002846 ORTHO05D002692 3.3e-08 62.8 137 42.3
CARHR097660 Cardamine hirsuta HOM05D002846 ORTHO05D002692 4.3e-08 62.4 143 38.5
Medtr2g083300 Medicago truncatula HOM05D002846 ORTHO05D002692 4.3e-08 62.4 136 33.8
TPR.G19979 Trifolium pratense HOM05D002846 ORTHO05D002692 4.3e-08 62.4 135 34.1
BcaB04g20571 Brassica carinata HOM05D002846 ORTHO05D002692 5.6e-08 62.0 147 38.1
Haze_09635 Corylus avellana HOM05D002846 ORTHO05D002692 5.6e-08 62.0 144 36.8
Psat5g251520 Pisum sativum HOM05D002846 ORTHO05D002692 5.6e-08 62.0 132 34.8
Potri.011G135700 Populus trichocarpa HOM05D002846 ORTHO05D002692 5.6e-08 62.0 144 39.6
Sp3g19720 Schrenkiella parvula HOM05D002846 ORTHO05D002692 5.6e-08 62.0 131 35.9
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 9.6e-08 61.2 141 38.3
Sabra16G0285000 Salix brachista HOM05D002846 ORTHO05D002692 9.6e-08 61.2 146 38.4
Cfa020399 Carpinus fangiana HOM05D002846 ORTHO05D002692 1.2e-07 60.8 143 37.1
arahy.Tifrunner.gnm1.ann1.M85TWM Arachis hypogaea HOM05D002846 ORTHO05D002692 1.6e-07 60.5 107 42.1
BcaC01g03489 Brassica carinata HOM05D002846 ORTHO05D002692 1.6e-07 60.5 142 38.7
C03p51900 Brassica napus HOM05D002846 ORTHO05D002692 1.6e-07 60.5 142 38.7
BolC3t17475H Brassica oleracea HOM05D002846 ORTHO05D002692 1.6e-07 60.5 142 38.7
Duzib268G1153 Durio zibethinus HOM05D002846 ORTHO05D002692 1.6e-07 60.5 144 37.5
Nn1g07065 Nelumbo nucifera HOM05D002846 ORTHO05D002692 1.6e-07 60.5 152 34.2
A03p42420 Brassica napus HOM05D002846 ORTHO05D002692 2.1e-07 60.1 142 38.7
BraA03t13394Z Brassica rapa HOM05D002846 ORTHO05D002692 2.1e-07 60.1 142 38.7
AUR62037135 Chenopodium quinoa HOM05D002846 ORTHO05D002692 2.1e-07 60.1 150 36.0
Nitab4.5_0002229g0220 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.1e-07 60.1 151 35.8
A01p33250 Brassica napus HOM05D002846 ORTHO05D002692 2.8e-07 59.7 147 36.1
BraA01t03443Z Brassica rapa HOM05D002846 ORTHO05D002692 2.8e-07 59.7 147 36.1
Cc05_g13390 Coffea canephora HOM05D002846 ORTHO05D002692 2.8e-07 59.7 148 36.5
ECA233G0087 Erigeron canadensis HOM05D002846 ORTHO05D002692 2.8e-07 59.7 121 38.0
Glyma.13G308000 Glycine max HOM05D002846 ORTHO05D002692 2.8e-07 59.7 92 46.7
Actinidia27214 Actinidia chinensis HOM05D002846 ORTHO05D002692 3.6e-07 59.3 156 35.9
arahy.Tifrunner.gnm1.ann1.EJQ6C2 Arachis hypogaea HOM05D002846 ORTHO05D002692 3.6e-07 59.3 108 42.6
BcaB06g26277 Brassica carinata HOM05D002846 ORTHO05D002692 3.6e-07 59.3 147 35.4
Carub.0003s2176 Capsella rubella HOM05D002846 ORTHO05D002692 3.6e-07 59.3 140 37.1
Eucgr.F00971 Eucalyptus grandis HOM05D002846 ORTHO05D002692 3.6e-07 59.3 140 37.1
Hma1.2p1_1344F.1_g277060 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 3.6e-07 59.3 146 34.2
Duzib213G0532 Durio zibethinus HOM05D002846 ORTHO05D002692 4.7e-07 58.9 139 36.7
Potri.001G419400 Populus trichocarpa HOM05D002846 ORTHO05D002692 6.2e-07 58.5 144 38.9
A05p27020 Brassica napus HOM05D002846 ORTHO05D002692 8.1e-07 58.2 149 36.9
BraA05t21588Z Brassica rapa HOM05D002846 ORTHO05D002692 8.1e-07 58.2 149 36.9
MBI02_g23957_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 8.1e-07 58.2 141 39.7
MD17G1094800 Malus domestica HOM05D002846 ORTHO05D002692 8.1e-07 58.2 71 53.5
Manes.03G127850 Manihot esculenta HOM05D002846 ORTHO05D002692 8.1e-07 58.2 110 38.2
BcaB04g19182 Brassica carinata HOM05D002846 ORTHO05D002692 1.1e-06 57.8 142 37.3
MELO3C018808.2 Cucumis melo HOM05D002846 ORTHO05D002692 1.1e-06 57.8 153 35.3
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 1.1e-06 57.8 137 38.7
AL3G35830 Arabidopsis lyrata HOM05D002846 ORTHO05D002692 1.4e-06 57.4 151 34.4
C05p41700 Brassica napus HOM05D002846 ORTHO05D002692 1.4e-06 57.4 145 37.2
BolC5t32905H Brassica oleracea HOM05D002846 ORTHO05D002692 1.4e-06 57.4 145 37.2
Atru.chr2.3239 Acer truncatum HOM05D002846 ORTHO05D002692 1.8e-06 57.0 103 39.8
Aa31LG8G8340 Aethionema arabicum HOM05D002846 ORTHO05D002692 1.8e-06 57.0 156 34.6
CsaV3_7G003710 Cucumis sativus L. HOM05D002846 ORTHO05D002692 1.8e-06 57.0 153 33.3
Sed0016321 Sechium edule HOM05D002846 ORTHO05D002692 1.8e-06 57.0 93 41.9
C01p42460 Brassica napus HOM05D002846 ORTHO05D002692 2.4e-06 56.6 149 35.6
MBI18_g03004_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 2.4e-06 56.6 122 39.3
Manes.12G075700 Manihot esculenta HOM05D002846 ORTHO05D002692 2.4e-06 56.6 101 40.6
THA.LOC104808493 Tarenaya hassleriana HOM05D002846 ORTHO05D002692 2.4e-06 56.6 135 38.5
BcaB05g22158 Brassica carinata HOM05D010845 ORTHO05D002692 3.1e-06 56.2 146 32.2
Carub.0008s1506 Capsella rubella HOM05D010845 ORTHO05D002692 3.1e-06 56.2 141 36.2
Dinv40727 Davidia involucrata HOM05D002846 ORTHO05D002692 3.1e-06 56.2 141 36.9
arahy.Tifrunner.gnm1.ann1.JLE0C4 Arachis hypogaea HOM05D002846 ORTHO05D002692 4.0e-06 55.8 102 44.1
BcaC05g28139 Brassica carinata HOM05D002846 ORTHO05D002692 4.0e-06 55.8 142 35.9
AL8G30220 Arabidopsis lyrata HOM05D010845 ORTHO05D002692 5.2e-06 55.5 135 35.6
Medtr4g046870 Medicago truncatula HOM05D002846 ORTHO05D002692 5.2e-06 55.5 68 55.9
EL10Ac9g20666 Beta vulgaris HOM05D002846 ORTHO05D002692 6.8e-06 55.1 152 34.2
BcaC03g14288 Brassica carinata HOM05D010845 ORTHO05D002692 6.8e-06 55.1 138 33.3
BolC1t04204H Brassica oleracea HOM05D002846 ORTHO05D002692 6.8e-06 55.1 147 35.4
Peaxi162Scf00407g00210 Petunia axillaris HOM05D002846 ORTHO05D002692 6.8e-06 55.1 144 38.9
arahy.Tifrunner.gnm1.ann1.53UQ7J Arachis hypogaea HOM05D002846 ORTHO05D002692 8.9e-06 54.7 110 42.7


User provided reference genes

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