Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 2.8e-47 191.4 86 100.0
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 6.3e-47 190.3 86 98.8
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 5.3e-46 187.2 86 96.5
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 2.2e-44 181.8 83 95.2
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 5.0e-44 180.6 82 97.6
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 4.7e-42 174.1 86 89.5
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 1.0e-41 172.9 83 89.2
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.0e-41 172.9 82 96.3
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 3.0e-41 171.4 83 86.7
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 3.0e-41 171.4 82 89.0
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 3.9e-41 171.0 84 86.9
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 6.7e-41 170.2 83 90.4
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 8.8e-41 169.9 85 84.7
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 1.1e-40 169.5 84 85.7
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 1.5e-40 169.1 83 85.5
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 1.5e-40 169.1 82 89.0
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.0e-40 168.7 83 88.0
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 2.6e-40 168.3 83 86.7
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 2.6e-40 168.3 83 85.5
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 2.6e-40 168.3 83 85.5
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 2.6e-40 168.3 83 85.5
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 2.6e-40 168.3 83 86.7
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 3.3e-40 167.9 83 88.0
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 3.3e-40 167.9 83 88.0
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 5.7e-40 167.2 83 85.5
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 7.4e-40 166.8 83 88.0
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 7.4e-40 166.8 83 85.5
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 7.4e-40 166.8 83 86.7
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 7.4e-40 166.8 85 84.7
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 9.7e-40 166.4 85 82.4
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 1.3e-39 166.0 83 85.5
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 1.3e-39 166.0 82 85.4
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.7e-39 165.6 86 86.0
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 2.8e-39 164.9 82 87.8
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 2.8e-39 164.9 83 86.7
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 2.8e-39 164.9 83 86.7
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.7e-39 164.5 82 85.4
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 3.7e-39 164.5 83 83.1
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 6.3e-39 163.7 85 82.4
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 6.3e-39 163.7 85 83.5
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 8.2e-39 163.3 80 83.8
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 1.1e-38 162.9 83 90.4
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 1.1e-38 162.9 83 86.7
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 1.1e-38 162.9 83 83.1
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.4e-38 162.5 86 84.9
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 1.8e-38 162.2 83 80.7
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 1.8e-38 162.2 83 81.9
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 2.4e-38 161.8 77 87.0
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 3.1e-38 161.4 83 83.1
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.1e-38 161.4 83 83.1
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 3.1e-38 161.4 83 85.5
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 4.1e-38 161.0 83 90.4
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 4.1e-38 161.0 84 82.1
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 5.3e-38 160.6 82 80.5
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 5.3e-38 160.6 83 90.4
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 5.3e-38 160.6 83 90.4
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 5.3e-38 160.6 83 90.4
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 7.0e-38 160.2 82 90.2
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 7.0e-38 160.2 82 89.0
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 7.0e-38 160.2 82 90.2
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 9.1e-38 159.8 83 81.9
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 1.5e-37 159.1 83 89.2
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 1.5e-37 159.1 83 89.2
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 1.5e-37 159.1 82 89.0
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 1.5e-37 159.1 83 89.2
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 1.5e-37 159.1 82 89.0
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 1.5e-37 159.1 82 89.0
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 1.5e-37 159.1 83 89.2
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.5e-37 159.1 79 83.5
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.5e-37 159.1 83 80.7
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 2.0e-37 158.7 82 82.9
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 2.0e-37 158.7 82 82.9
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 2.0e-37 158.7 103 69.9
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 2.6e-37 158.3 83 81.9
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.5e-37 157.5 83 81.9
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 5.9e-37 157.1 78 85.9
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 5.9e-37 157.1 78 85.9
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 7.7e-37 156.8 78 87.2
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 7.7e-37 156.8 78 87.2
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 7.7e-37 156.8 78 87.2
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 7.7e-37 156.8 78 87.2
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 1.3e-36 156.0 84 81.0
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 2.9e-36 154.8 80 83.8
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 3.8e-36 154.5 82 81.7
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 6.5e-36 153.7 84 82.1
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 1.1e-35 152.9 78 83.3
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 1.4e-35 152.5 82 86.6
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 3.2e-35 151.4 84 79.8
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 4.2e-35 151.0 82 80.5
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 4.2e-35 151.0 77 83.1
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 7.2e-35 150.2 76 81.6
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 2.1e-34 148.7 80 81.2
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 8.0e-34 146.7 76 82.9
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.4e-33 146.0 84 78.6
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 1.4e-33 146.0 82 74.4
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 7.4e-32 140.2 73 78.1
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 9.1e-30 133.3 83 74.7
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 5.9e-29 130.6 64 84.4
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.3e-28 129.4 60 88.3
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 3.8e-28 127.9 59 86.4
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 6.5e-28 127.1 60 86.7
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 8.5e-28 126.7 60 86.7
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 2.3e-25 118.6 59 83.1
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 3.5e-21 104.8 57 75.4
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 5.9e-21 104.0 50 88.0
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 3.6e-18 94.7 64 60.9
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 4.1e-14 81.3 58 60.3
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 4.1e-14 81.3 56 58.9
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.3e-11 71.6 36 80.6
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.2e-10 69.7 33 84.8
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 4.7e-10 67.8 37 86.5
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.0e-10 67.0 36 72.2
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 4.4e-08 61.2 36 72.2


User provided reference genes

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