Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 8.0e-312 1072.8 587 100.0
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 5.5e-304 1047.0 587 97.6
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.7e-276 955.7 588 90.1
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.3e-232 808.1 640 75.0
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 4.1e-230 801.6 617 73.3
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 4.9e-191 671.8 720 60.1
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.9e-175 619.4 443 73.4
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.1e-169 600.9 531 71.6
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 4.1e-97 359.8 582 38.8
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 1.7e-95 354.4 583 38.4
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 8.0e-93 345.5 633 35.7
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 3.0e-92 343.6 581 37.2
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.6e-91 340.5 582 37.3
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.3e-89 332.8 581 36.8
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.3e-87 328.2 582 38.0
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.5e-86 324.7 582 37.5
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 4.0e-84 316.6 525 38.3
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.0e-83 314.3 586 36.2
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.6e-80 304.7 583 36.4
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.0e-71 275.4 521 36.5
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 1.2e-69 268.5 594 33.5
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.6e-69 268.1 581 33.0
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 4.7e-69 266.5 595 34.8
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.0e-68 265.4 583 33.1
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 2.3e-68 264.2 609 33.5
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 9.8e-67 258.8 586 34.1
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 4.9e-66 256.5 685 30.1
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.1e-65 255.4 589 33.8
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.1e-65 253.4 686 29.3
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 9.2e-65 252.3 591 38.1
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.0e-63 248.8 519 32.9
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 4.7e-61 240.0 529 32.1
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 3.1e-60 237.3 591 33.0
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.5e-59 235.0 602 30.9
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 3.4e-59 233.8 430 35.8
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.4e-57 228.4 430 35.1
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.2e-57 227.3 653 33.4
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 3.2e-57 227.3 471 33.5
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 3.2e-57 227.3 668 29.5
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 3.2e-57 227.3 430 34.2
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 9.2e-57 225.7 594 31.6
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 9.2e-57 225.7 430 34.7
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 6.0e-56 223.0 427 35.8
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.3e-55 221.1 612 34.8
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.3e-55 221.1 651 32.9
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 6.6e-55 219.5 584 29.5
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.1e-54 218.8 678 28.5
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.9e-54 218.0 597 31.7
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.3e-54 216.9 654 32.7
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 7.3e-54 216.1 726 27.5
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 7.3e-54 216.1 719 27.8
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.6e-53 214.9 654 32.7
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.1e-53 214.5 653 32.5
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.1e-53 214.5 580 30.9
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.8e-52 211.5 757 27.7
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 1.8e-52 211.5 757 26.9
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 2.3e-52 211.1 759 27.0
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 6.8e-52 209.5 653 32.8
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.5e-51 208.4 637 35.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 2.2e-50 204.5 599 30.7
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 2.9e-50 204.1 587 30.2
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 2.4e-49 201.1 314 42.0
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 2.4e-49 201.1 426 33.1
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 3.2e-49 200.7 306 42.2
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 4.1e-49 200.3 425 31.1
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 1.6e-48 198.4 241 44.8
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 3.5e-48 197.2 637 29.0
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 5.1e-47 193.4 424 34.0
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 6.6e-47 193.0 608 28.6
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.7e-45 186.8 639 34.3
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 6.8e-44 183.0 408 34.8
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.5e-43 181.8 269 40.5
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 6.4e-42 176.4 431 30.9
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 1.4e-41 175.3 585 28.4
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.9e-41 174.9 875 27.9
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 7.1e-41 172.9 270 37.8
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 7.1e-41 172.9 420 31.9
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 2.1e-40 171.4 584 28.6
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 2.3e-39 167.9 258 40.3
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 3.0e-39 167.5 444 30.9
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 5.6e-38 163.3 431 33.2
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 5.6e-38 163.3 390 34.1
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 3.1e-36 157.5 702 25.5
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 8.9e-36 156.0 410 32.2
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 9.9e-35 152.5 689 25.1
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 4.9e-34 150.2 441 29.0
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 8.4e-34 149.4 689 25.0
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 3.2e-33 147.5 300 34.7
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.2e-33 147.5 103 80.6
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.2e-32 145.6 385 31.2
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 6.0e-32 143.3 421 29.5
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 7.8e-32 142.9 698 25.9
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.7e-31 141.7 516 28.3
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 2.3e-31 141.4 235 35.3
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.1e-30 139.0 768 24.9
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 7.3e-30 136.3 716 25.0
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.3e-29 135.6 711 25.0
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.1e-28 132.5 228 36.4
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.1e-28 132.5 154 44.2
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.4e-28 132.1 313 35.5
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.4e-28 132.1 769 24.1
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 3.1e-28 131.0 259 36.3
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 4.0e-28 130.6 152 46.1
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 6.9e-28 129.8 711 24.9
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.2e-27 129.0 361 32.4
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.5e-27 128.6 373 29.5
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.3e-26 125.6 685 23.9
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 3.8e-26 124.0 112 50.9
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 2.4e-25 121.3 701 25.4
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.1e-24 118.2 716 23.9
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 2.7e-24 117.9 710 23.1
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 3.9e-23 114.0 714 23.7
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 5.1e-23 113.6 734 23.3
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 6.2e-21 106.7 715 24.2
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.1e-20 104.4 286 30.1
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 6.4e-18 96.7 372 25.0
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.9e-17 95.1 388 27.8
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 2.1e-16 91.7 722 23.0
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 2.1e-16 91.7 282 28.0
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.0e-15 89.4 643 22.9
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 1.3e-15 89.0 109 46.8
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 6.7e-15 86.7 429 24.5
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 6.7e-15 86.7 429 24.5
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 7.6e-11 73.2 108 38.0
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 2.7e-08 64.7 202 30.7
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 6.0e-08 63.5 367 25.3
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 6.0e-08 63.5 95 37.9
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 7.9e-08 63.2 144 33.3
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.0e-07 62.8 367 25.3
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 5.1e-07 60.5 99 36.4


User provided reference genes

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