Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 0.0e+00 1163.3 578 100.0
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 0.0e+00 1148.3 578 98.8
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 0.0e+00 1142.5 578 98.3
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 0.0e+00 1076.2 578 92.6
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 4.8e-308 1060.4 588 89.8
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.5e-306 1055.4 572 91.8
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 2.1e-300 1035.0 573 89.9
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 2.2e-268 928.7 564 81.4
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 9.1e-267 923.3 562 80.1
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 4.2e-264 914.4 577 78.2
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 8.0e-263 910.2 569 78.7
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 5.2e-262 907.5 567 79.9
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 1.7e-260 902.5 574 78.9
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 1.3e-257 892.9 565 78.2
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 5.0e-257 891.0 564 78.2
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 1.1e-256 889.8 560 78.0
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 7.2e-256 887.1 571 78.5
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.8e-254 882.5 560 77.5
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 4.0e-254 881.3 569 76.8
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 8.8e-254 880.2 565 77.3
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 1.5e-253 879.4 565 76.8
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 2.0e-253 879.0 563 76.9
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 2.6e-253 878.6 565 77.0
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 2.6e-253 878.6 578 75.3
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 3.4e-253 878.2 565 76.6
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 5.7e-253 877.5 565 76.3
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.7e-253 877.5 565 77.9
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.7e-253 877.5 565 77.9
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 6.3e-252 874.0 573 75.0
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 6.3e-252 874.0 565 77.7
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 8.3e-252 873.6 564 77.8
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.8e-251 872.5 564 77.5
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 4.1e-251 871.3 563 76.4
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 2.0e-250 869.0 560 77.3
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.0e-249 866.7 561 75.6
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.2e-247 859.8 562 77.0
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 2.1e-247 859.0 572 75.3
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 2.1e-247 859.0 572 75.3
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 2.1e-247 859.0 564 73.9
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 4.7e-247 857.8 565 75.9
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.0e-246 856.7 561 75.0
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 2.3e-246 855.5 563 75.0
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 7.5e-245 850.5 563 74.8
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 3.2e-243 845.1 565 75.0
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 1.2e-242 843.2 574 72.1
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 4.6e-242 841.3 574 74.0
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 3.0e-241 838.6 569 74.5
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 3.0e-241 838.6 576 74.1
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 3.9e-241 838.2 567 74.1
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 6.6e-241 837.4 562 72.6
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 8.6e-241 837.0 577 74.2
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.5e-240 836.3 571 71.6
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 2.8e-239 832.0 564 72.7
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 2.8e-239 832.0 564 73.0
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 2.3e-238 828.9 588 72.1
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 3.1e-238 828.6 550 74.2
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 4.0e-238 828.2 563 72.3
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 6.8e-238 827.4 562 74.6
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 6.4e-236 820.8 564 71.3
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.4e-235 819.7 566 72.3
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 4.1e-235 818.1 565 72.0
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 4.1e-235 818.1 564 71.3
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 1.2e-234 816.6 595 70.3
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 1.6e-234 816.2 567 71.3
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 3.5e-234 815.1 556 73.2
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 4.6e-234 814.7 619 67.2
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 1.1e-232 810.1 593 68.6
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 9.5e-232 807.0 551 73.9
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 1.6e-231 806.2 562 71.0
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 6.2e-231 804.3 562 71.0
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 2.3e-230 802.4 563 71.0
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 3.1e-230 802.0 565 72.4
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 4.0e-230 801.6 566 71.0
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 6.8e-230 800.8 563 71.0
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 2.6e-229 798.9 564 70.9
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.6e-229 798.9 564 73.0
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 4.4e-229 798.1 563 70.9
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 1.3e-228 796.6 566 70.5
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.0e-217 760.4 461 80.7
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 1.9e-216 756.1 562 69.0
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 9.3e-211 737.3 458 78.2
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 2.3e-209 732.6 574 66.2
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.2e-205 720.3 635 61.3
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 4.5e-205 718.4 571 64.6
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 7.1e-195 684.5 455 73.4
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.3e-193 680.2 419 80.7
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 8.4e-188 661.0 399 80.5
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 9.6e-184 647.5 630 55.1
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 4.1e-182 642.1 404 77.7
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.2e-181 640.6 415 75.7
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.1e-179 634.0 622 54.7
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.1e-179 634.0 622 54.7
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 3.9e-177 625.5 417 74.6
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 7.9e-170 601.3 421 72.0
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 1.1e-168 597.4 414 72.9
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 2.6e-165 586.3 394 74.6
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.4e-163 580.5 416 69.2
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 4.7e-154 548.9 549 53.2
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 1.5e-152 543.9 564 53.9
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 1.6e-146 523.9 304 83.2
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.7e-135 487.3 299 79.9
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 2.2e-127 460.3 313 72.2
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 3.9e-124 449.5 555 45.4
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 3.5e-117 426.4 657 39.4
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 2.0e-112 410.6 240 84.2
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.7e-87 327.8 198 80.8
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.5e-80 304.7 565 36.6
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 2.5e-75 287.3 172 83.7
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 2.2e-66 257.7 411 38.4
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 1.3e-58 231.9 136 80.1
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 5.3e-57 226.5 132 78.0
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.0e-56 224.6 146 72.6
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 7.7e-56 222.6 130 80.0
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 2.7e-45 187.6 102 87.3
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 3.6e-45 187.2 154 64.3
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 6.1e-37 159.8 104 76.9
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 9.4e-30 136.0 172 47.1
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 2.8e-26 124.4 66 84.8
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.8e-17 95.1 54 77.8
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 4.7e-13 80.5 439 23.7
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 4.1e-09 67.4 148 31.8
Os08g0522700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.0e-07 60.5 162 28.4
Os11g0619800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.9e-06 58.5 146 30.1
Medtr7g094900 Medicago truncatula HOM05D002203 ORTHO05D002647 4.3e-06 57.4 162 29.0
Medtr7g094910 Medicago truncatula HOM05D002203 ORTHO05D002647 4.3e-06 57.4 162 29.0
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 5.6e-06 57.0 302 23.2
Os08g0523000 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.5e-06 56.2 152 26.3


User provided reference genes

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