Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 1.4e-105 386.3 196 100.0
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 3.1e-102 375.2 193 97.9
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 1.8e-94 349.4 191 92.1
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.1e-91 340.1 192 87.0
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 7.2e-91 337.4 192 85.9
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 1.2e-90 336.7 190 87.9
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 1.2e-77 293.5 156 96.2
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 9.5e-75 283.9 189 75.7
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 4.0e-73 278.5 190 73.7
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 5.4e-70 268.1 193 69.9
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 2.3e-65 252.7 190 66.3
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 4.0e-65 251.9 178 70.8
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 6.8e-65 251.1 178 70.2
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 3.7e-63 245.4 186 65.1
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.4e-62 243.4 167 69.5
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 1.9e-62 243.0 201 63.2
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 5.4e-62 241.5 165 70.9
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 4.6e-61 238.4 190 62.1
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.7e-60 236.5 199 59.8
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.7e-60 236.5 179 65.9
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.0e-60 235.7 197 61.4
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 5.1e-60 235.0 188 61.7
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 1.2e-58 230.3 188 63.8
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 4.7e-58 228.4 183 63.4
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 1.1e-57 227.3 198 56.1
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 2.4e-57 226.1 202 56.9
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 2.4e-57 226.1 177 66.7
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 6.8e-57 224.6 196 58.2
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 6.8e-57 224.6 197 59.4
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 1.5e-56 223.4 199 57.3
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 2.0e-56 223.0 198 57.6
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 4.4e-56 221.9 209 56.5
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 4.4e-56 221.9 195 61.5
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 9.9e-56 220.7 184 60.3
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 9.9e-56 220.7 187 60.4
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 1.7e-55 219.9 194 57.7
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 3.8e-55 218.8 156 67.9
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 3.8e-55 218.8 162 66.7
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 4.9e-55 218.4 156 67.9
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 6.4e-55 218.0 195 60.0
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 8.4e-55 217.6 201 54.2
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 1.1e-54 217.2 190 58.4
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.9e-54 216.5 190 59.5
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 2.4e-54 216.1 156 67.9
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 4.2e-54 215.3 195 59.5
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 5.4e-54 214.9 162 66.7
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 5.4e-54 214.9 200 53.5
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 9.2e-54 214.2 175 61.7
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.1e-53 213.0 200 54.0
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.1e-53 213.0 190 54.7
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 2.7e-53 212.6 186 59.1
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 3.5e-53 212.2 185 58.9
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 4.6e-53 211.8 156 66.7
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 6.0e-53 211.5 155 65.2
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 6.0e-53 211.5 200 53.5
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 6.0e-53 211.5 198 52.5
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 6.0e-53 211.5 198 52.5
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 7.8e-53 211.1 213 53.5
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.0e-52 210.7 184 59.2
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 1.3e-52 210.3 196 55.6
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.7e-52 209.9 166 60.2
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 2.3e-52 209.5 183 60.7
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 3.0e-52 209.1 162 64.2
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 1.1e-51 207.2 156 64.1
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 1.5e-51 206.8 187 56.7
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 4.3e-51 205.3 193 56.0
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 1.2e-50 203.8 181 56.9
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 3.6e-50 202.2 200 53.0
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 4.7e-50 201.8 193 54.9
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 6.2e-50 201.4 202 54.0
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 1.8e-49 199.9 173 57.8
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 2.4e-49 199.5 201 53.2
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.0e-49 197.6 187 52.9
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 9.0e-49 197.6 174 55.2
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.5e-48 196.8 185 58.9
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 2.0e-48 196.4 192 56.2
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 3.4e-48 195.7 182 54.9
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 2.9e-47 192.6 189 56.1
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 6.4e-47 191.4 189 54.0
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 8.4e-47 191.0 179 55.3
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 1.1e-46 190.7 192 55.7
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.2e-46 188.7 179 54.7
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 7.1e-46 188.0 198 52.0
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 2.1e-45 186.4 194 52.1
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 1.7e-44 183.3 187 54.0
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 3.0e-44 182.6 179 54.2
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 3.9e-44 182.2 181 51.9
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 1.5e-43 180.3 157 58.0
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 1.5e-43 180.3 157 58.0
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 9.6e-43 177.6 127 70.1
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 8.1e-42 174.5 192 53.1
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 6.9e-41 171.4 180 49.4
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 4.5e-40 168.7 178 50.0
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 4.6e-37 158.7 120 70.0
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 6.7e-36 154.8 124 62.1
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 8.7e-36 154.5 122 58.2
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 2.5e-35 152.9 122 63.1
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 1.3e-34 150.6 124 61.3
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 6.9e-33 144.8 125 57.6
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 3.2e-30 136.0 202 41.1
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 5.1e-28 128.6 98 61.2
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 1.1e-27 127.5 157 47.1
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 2.5e-27 126.3 131 48.1
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 4.3e-27 125.6 132 51.5
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.3e-26 124.0 103 63.1
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 4.8e-26 122.1 103 57.3
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 1.4e-25 120.6 128 54.7
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 3.1e-25 119.4 85 64.7
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 4.0e-25 119.0 102 56.9
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 8.4e-23 111.3 124 44.4
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 8.4e-23 111.3 83 63.9
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.7e-21 106.3 94 59.6
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 5.1e-20 102.1 94 56.4
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 5.1e-20 102.1 203 35.0
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 1.5e-19 100.5 116 41.4
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 1.5e-19 100.5 116 41.4
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 2.5e-19 99.8 94 53.2
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 5.7e-19 98.6 113 44.2
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 3.7e-18 95.9 68 67.6
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 5.3e-17 92.0 87 54.0
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.2e-16 90.9 71 59.2
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 2.6e-16 89.7 68 64.7
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 1.5e-11 73.9 55 63.6
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 1.3e-10 70.9 68 48.5
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 1.7e-10 70.5 63 54.0
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 2.8e-10 69.7 125 35.2
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 3.7e-10 69.3 97 41.2
SGA_v2.0_scaffold74G24592 Striga asiatica HOM05D000172 ORTHO05D008216 4.8e-10 68.9 71 50.7
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 2.0e-08 63.5 63 47.6
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 3.2e-06 56.2 107 34.6
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 3.2e-06 56.2 107 34.6


User provided reference genes

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