Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 0.0e+00 1342.4 697 100.0
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 0.0e+00 1332.4 697 99.3
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 0.0e+00 1325.8 697 98.4
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 0.0e+00 1142.9 660 90.9
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 3.6e-302 1041.2 678 82.4
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.6e-289 999.2 685 78.0
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 8.6e-288 993.4 685 76.9
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.0e-224 783.9 700 60.0
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 9.7e-223 777.3 680 60.7
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 4.2e-218 761.9 671 61.3
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 1.0e-216 757.3 601 64.6
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 6.8e-216 754.6 690 58.0
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.6e-212 743.4 644 61.6
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.6e-209 733.4 676 57.8
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 8.0e-209 731.1 664 59.3
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 2.3e-208 729.6 679 58.9
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 1.2e-207 727.2 682 58.5
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.5e-207 724.5 689 58.1
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 7.5e-207 724.5 670 57.9
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 6.3e-206 721.5 680 57.2
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 3.1e-205 719.2 657 60.3
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 5.4e-205 718.4 659 58.4
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 9.2e-205 717.6 680 57.5
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 5.9e-204 714.9 679 56.6
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.3e-203 713.8 689 56.7
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.7e-203 713.4 666 57.4
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.1e-202 710.7 646 57.9
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 2.5e-202 709.5 678 57.4
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 3.3e-202 709.1 666 56.8
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.6e-201 706.8 692 56.2
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.8e-200 703.4 678 56.3
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 4.0e-200 702.2 691 55.6
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 6.8e-200 701.4 654 58.4
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.8e-197 693.3 701 54.9
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 3.2e-197 692.6 666 55.1
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 4.6e-196 688.7 670 54.9
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 2.3e-195 686.4 683 55.1
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 3.0e-195 686.0 674 55.8
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 3.0e-195 686.0 670 55.1
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.0e-195 685.3 689 55.9
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 8.6e-195 684.5 695 55.4
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 8.6e-195 684.5 689 56.2
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 8.6e-195 684.5 680 53.2
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 5.6e-194 681.8 693 54.4
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 7.3e-194 681.4 675 53.8
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.2e-193 680.6 683 53.6
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.0e-192 677.6 656 56.6
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 1.4e-192 677.2 663 54.4
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 5.2e-192 675.2 600 59.0
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 8.9e-192 674.5 679 52.0
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 2.6e-191 672.9 778 50.6
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 3.4e-191 672.5 671 56.3
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 4.4e-191 672.2 672 56.1
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.3e-190 670.6 650 56.5
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 3.7e-190 669.1 681 54.9
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.9e-190 668.7 618 58.4
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.1e-189 665.6 667 53.8
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 5.4e-189 665.2 667 54.9
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 1.6e-188 663.7 684 53.5
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.0e-188 663.3 682 54.3
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 2.7e-188 662.9 664 55.3
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.6e-188 662.1 645 54.3
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 6.0e-188 661.8 682 54.3
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.1e-186 657.5 682 55.0
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 1.5e-186 657.1 752 50.5
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.3e-186 654.8 670 55.5
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 9.5e-186 654.4 651 54.1
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 1.6e-185 653.7 719 52.6
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.8e-185 652.9 713 53.6
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 2.8e-185 652.9 669 52.9
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 3.6e-185 652.5 696 50.6
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 3.6e-185 652.5 713 53.2
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 6.2e-185 651.7 610 57.0
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-183 647.5 676 51.0
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.5e-183 647.1 684 52.0
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.0e-183 646.7 671 52.5
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 3.4e-183 646.0 670 54.9
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 2.2e-182 643.3 693 50.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.7e-182 642.5 676 53.4
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.1e-181 641.0 729 50.9
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.4e-181 640.6 616 54.4
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 3.2e-181 639.4 676 50.6
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 5.4e-181 638.6 725 50.5
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 2.7e-180 636.3 679 54.1
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 6.0e-180 635.2 641 57.3
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 3.0e-179 632.9 704 49.4
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.0e-179 632.9 648 55.9
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.9e-179 632.5 729 50.8
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 6.6e-179 631.7 687 49.8
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.1e-178 630.9 647 52.9
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.1e-178 630.9 661 53.7
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 5.6e-178 628.6 676 53.0
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.2e-177 627.5 684 51.8
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 2.1e-177 626.7 587 59.5
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 8.9e-176 621.3 732 50.7
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.5e-175 620.5 582 58.1
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 2.0e-175 620.2 621 55.1
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 2.6e-175 619.8 646 52.5
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 9.9e-175 617.8 673 50.8
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 9.9e-175 617.8 671 50.8
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 1.7e-174 617.1 675 50.7
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 1.7e-174 617.1 678 50.4
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.9e-174 616.3 657 50.5
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 4.1e-173 612.5 703 48.4
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 4.7e-169 599.0 649 51.0
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.4e-168 597.4 693 47.6
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.4e-168 597.4 664 50.3
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 1.8e-168 597.0 540 59.1
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 8.9e-168 594.7 650 51.5
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 9.9e-167 591.3 698 47.9
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 4.9e-166 589.0 656 50.0
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 3.2e-165 586.3 680 48.7
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 5.6e-162 575.5 685 49.8
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 2.4e-157 560.1 715 47.0
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 3.2e-157 559.7 670 48.2
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 5.4e-157 558.9 676 47.6
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 9.3e-157 558.1 664 49.7
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.8e-155 553.9 649 47.5
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 5.1e-155 552.4 636 50.2
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 1.4e-152 544.3 661 47.2
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.8e-152 543.9 661 47.2
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 6.9e-152 542.0 643 47.7
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.9e-150 536.6 609 50.7
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 8.4e-150 535.0 668 46.7
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 2.1e-148 530.4 715 46.2
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 4.3e-146 522.7 676 46.3
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.6e-145 520.8 459 60.8
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 2.9e-142 510.0 658 45.6
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 3.2e-141 506.5 679 44.9
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 4.6e-140 502.7 480 56.5
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.9e-130 470.7 492 53.0
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.0e-123 448.4 503 52.9
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 5.5e-117 426.0 653 41.8
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 2.1e-116 424.1 751 37.8
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 4.4e-114 416.4 667 40.3
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.5e-109 401.4 430 52.8
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.7e-106 389.4 653 38.4
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 2.8e-105 387.1 497 45.1
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.0e-102 376.3 673 37.1
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 2.5e-101 374.0 645 38.4
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 7.2e-101 372.5 697 37.4
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 9.4e-101 372.1 643 37.6
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.8e-96 357.8 405 50.1
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 9.5e-93 345.5 746 35.4
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.6e-92 343.6 765 34.1
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.3e-89 335.1 674 37.1
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.6e-87 328.2 633 36.0
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.1e-85 322.0 818 32.3
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 2.6e-82 310.8 713 33.1
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 9.8e-82 308.9 654 36.7
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 6.4e-81 306.2 515 39.2
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 6.8e-75 286.2 218 66.1
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 4.4e-74 283.5 557 36.3
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.9e-73 280.8 214 65.9
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.9e-72 278.1 290 54.5
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 5.4e-72 276.6 630 33.7
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.7e-71 274.2 516 37.0
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 6.8e-67 259.6 519 34.7
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 3.7e-65 253.8 384 40.4
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 2.9e-49 201.1 338 36.4
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.9e-32 145.2 251 37.5
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.7e-31 141.4 109 64.2
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 1.8e-27 128.6 183 39.3
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-21 109.4 109 55.0
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 8.2e-20 103.2 66 75.8
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 1.3e-17 95.9 63 71.4
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 7.2e-16 90.1 118 45.8
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 8.8e-14 83.2 52 71.2
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 1.3e-12 79.3 175 35.4
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 3.7e-12 77.8 153 35.9
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.3e-09 69.3 54 53.7
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 1.4e-06 59.3 48 58.3


User provided reference genes

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