Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g024530 Solanum pennellii HOM05D007594 ORTHO05D009607 0.0e+00 1839.3 932 100.0
Solyc07g048100.3 Solanum lycopersicum HOM05D007594 ORTHO05D009607 0.0e+00 1742.6 917 96.5
CAN.G897.9 Capsicum annuum HOM05D007594 ORTHO05D009607 0.0e+00 1494.9 919 84.1
Nitab4.5_0004215g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 0.0e+00 1335.9 918 77.1
Nitab4.5_0004358g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 0.0e+00 1332.4 916 76.4
Peaxi162Scf02035g00032 Petunia axillaris HOM05D007594 ORTHO05D009607 0.0e+00 1290.0 946 72.3
PGSC0003DMG400006140 Solanum tuberosum HOM05D007594 ORTHO05D009607 2.3e-291 1005.7 548 94.3
Dinv03295 Davidia involucrata HOM05D007594 ORTHO05D009607 4.5e-167 592.8 1014 39.6
Actinidia06215 Actinidia chinensis HOM05D007594 ORTHO05D009607 3.6e-148 530.0 1015 37.1
Cc00_g06100 Coffea canephora HOM05D007594 ORTHO05D009607 2.8e-140 503.8 930 37.6
TAR633G1990 Trochodendron aralioides HOM05D007594 ORTHO05D009607 1.3e-134 485.0 1051 34.5
vmacro13773 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 5.4e-128 463.0 962 36.2
Hma1.2p1_1342F.1_g276950 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 6.0e-127 459.5 994 35.7
DCAR_006600 Daucus carota HOM05D007594 ORTHO05D009607 6.6e-126 456.1 998 34.8
Thecc.10G140800 Theobroma cacao HOM05D007594 ORTHO05D009607 1.9e-125 454.5 992 35.6
MD00G1152500 Malus domestica HOM05D007594 ORTHO05D009607 1.5e-122 444.9 1024 35.6
Potri.003G193100 Populus trichocarpa HOM05D007594 ORTHO05D009607 5.4e-120 436.4 907 35.5
Duzib128G1040 Durio zibethinus HOM05D007594 ORTHO05D009607 3.5e-119 433.7 982 33.9
SGA_v2.0_scaffold124G33645 Striga asiatica HOM05D007594 ORTHO05D009607 9.6e-117 425.6 954 35.2
Prupe.2G044000 Prunus persica HOM05D007594 ORTHO05D009607 1.1e-115 422.2 999 34.3
SalBow5G4015 Salvia bowleyana HOM05D007594 ORTHO05D009607 1.2e-111 408.7 1030 32.3
RcHm_v2.0_Chr1g0327541 Rosa chinensis HOM05D007594 ORTHO05D009607 6.0e-111 406.4 1022 34.1
Manes.04G156000 Manihot esculenta HOM05D007594 ORTHO05D009607 4.3e-109 400.2 908 34.6
Gorai.011G220800 Gossypium raimondii HOM05D007594 ORTHO05D009607 2.8e-108 397.5 900 35.0
GSVIVG01036598001 Vitis vinifera HOM05D007594 ORTHO05D009607 2.2e-105 387.9 855 35.6
Lj3g0014217 Lotus japonicus HOM05D007594 ORTHO05D009607 2.9e-105 387.5 902 34.1
Rhsim07G0071100 Rhododendron simsii HOM05D007594 ORTHO05D009607 6.5e-105 386.3 1012 33.4
Gohir.D10G197300 Gossypium hirsutum HOM05D007594 ORTHO05D009607 8.4e-105 386.0 893 34.8
Gohir.A10G189500 Gossypium hirsutum HOM05D007594 ORTHO05D009607 4.2e-104 383.6 898 34.4
Glyma.11G170937 Glycine max HOM05D007594 ORTHO05D009607 1.1e-101 375.6 1011 31.4
Aqoxy1G00415 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 4.3e-101 373.6 962 32.6
Haze_02988 Corylus avellana HOM05D007594 ORTHO05D009607 4.8e-100 370.2 939 34.5
FvH4_7g03921 Fragaria vesca HOM05D007594 ORTHO05D009607 1.4e-99 368.6 1011 33.4
EL10Ac3g05954 Beta vulgaris HOM05D007594 ORTHO05D009607 3.1e-99 367.5 1063 30.7
arahy.Tifrunner.gnm1.ann1.HR2C9L Arachis hypogaea HOM05D007594 ORTHO05D009607 4.1e-99 367.1 991 31.5
MBI13_g07373_MAGBIO Magnolia biondii HOM05D007594 ORTHO05D009607 5.3e-99 366.7 1068 32.3
Nn7g36922 Nelumbo nucifera HOM05D007594 ORTHO05D009607 5.3e-99 366.7 975 31.3
arahy.Tifrunner.gnm1.ann1.IJ2ITM Arachis hypogaea HOM05D007594 ORTHO05D009607 3.4e-98 364.0 990 31.4
FAN06G1277 Fragaria x ananassa HOM05D007594 ORTHO05D009607 7.7e-98 362.8 1011 33.0
CiPaw.13G016300 Carya illinoinensis HOM05D007594 ORTHO05D009607 2.2e-97 361.3 879 34.6
Hma1.2p1_1730F.1_g299670 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 2.9e-97 360.9 959 32.4
ClCG11G013140 Citrullus lanatus HOM05D007594 ORTHO05D009607 7.2e-96 356.3 880 33.0
Phvul.005G018200 Phaseolus vulgaris HOM05D007594 ORTHO05D009607 7.2e-96 356.3 911 32.3
CANSAT56G2828 Cannabis sativa HOM05D007594 ORTHO05D009607 1.6e-95 355.1 977 32.9
CsaV3_5G029660 Cucumis sativus L. HOM05D007594 ORTHO05D009607 1.6e-95 355.1 922 32.8
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 4.6e-95 353.6 1024 32.5
ECA246G0181 Erigeron canadensis HOM05D007594 ORTHO05D009607 1.0e-94 352.4 981 33.2
VMungo1080G0650 Vigna mungo HOM05D007594 ORTHO05D009607 3.9e-94 350.5 1011 31.4
AUR62023865 Chenopodium quinoa HOM05D007594 ORTHO05D009607 6.7e-94 349.7 1061 32.0
TWI63G1387 Tripterygium wilfordii HOM05D007594 ORTHO05D009607 2.0e-93 348.2 851 33.5
HanXRQChr05g0146261 Helianthus annuus HOM05D007594 ORTHO05D009607 1.3e-92 345.5 926 33.4
Sed0005696 Sechium edule HOM05D007594 ORTHO05D009607 8.2e-92 342.8 966 31.3
Ciclev10003355m.g Citrus clementina HOM05D007594 ORTHO05D009607 3.4e-90 337.4 875 32.3
Medtr3g013490 Medicago truncatula HOM05D007594 ORTHO05D009607 1.4e-86 325.5 920 31.1
AUR62002319 Chenopodium quinoa HOM05D007594 ORTHO05D009607 5.1e-86 323.6 1046 30.7
Atru.chr12.1243 Acer truncatum HOM05D007594 ORTHO05D009607 8.8e-86 322.8 780 33.3
Eucgr.G03206 Eucalyptus grandis HOM05D007594 ORTHO05D009607 2.6e-82 311.2 922 30.5
ATR0307G127 Amborella trichopoda HOM05D007594 ORTHO05D009607 2.2e-81 308.1 1158 27.8
Lsat_1_v5_gn_1_118241 Lactuca sativa HOM05D007594 ORTHO05D009607 1.5e-80 305.4 861 31.4
PSO339G5236 Papaver somniferum HOM05D007594 ORTHO05D009607 4.2e-80 303.9 878 30.1
Psat5g215360 Pisum sativum HOM05D007594 ORTHO05D009607 1.4e-78 298.9 1176 27.0
FAN01G0543 Fragaria x ananassa HOM05D007594 ORTHO05D009607 7.4e-77 293.1 1001 31.1
Sc11g0006300 Simmondsia chinensis HOM05D007594 ORTHO05D009607 1.8e-75 288.5 582 33.3
PSO384G4678 Papaver somniferum HOM05D007594 ORTHO05D009607 3.8e-73 280.8 839 29.9
unitig_22.g5331 Utricularia gibba HOM05D007594 ORTHO05D009607 3.2e-64 251.1 801 31.2
Migut.B01185 Erythranthe guttata HOM05D007594 ORTHO05D009607 1.2e-63 249.2 296 44.9
THA.LOC104826746 Tarenaya hassleriana HOM05D007594 ORTHO05D009607 3.6e-63 247.7 830 30.6
TPR.G20651 Trifolium pratense HOM05D007594 ORTHO05D009607 8.8e-62 243.0 320 41.6
Lj9P657T24 Lonicera japonica HOM05D007594 ORTHO05D009607 4.4e-61 240.7 378 38.1
Os03g0811200 Oryza sativa ssp. japonica HOM05D007594 ORTHO05D009607 1.2e-53 216.1 846 28.1
Hund03165 Selenicereus undatus HOM05D007594 ORTHO05D009607 1.4e-51 209.1 897 27.2
Hund03166 Selenicereus undatus HOM05D007594 ORTHO05D009607 2.0e-50 205.3 898 27.5
Zm00001eb062110 Zea mays HOM05D007594 ORTHO05D009607 8.6e-49 199.9 610 29.5
Ca_14092_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 7.3e-48 196.8 872 26.9
Nn7g38492 Nelumbo nucifera HOM05D007594 ORTHO05D009607 4.4e-45 187.6 641 29.3
Nn032s41616 Nelumbo nucifera HOM05D007594 ORTHO05D009607 1.9e-40 172.2 181 47.0
TPR.G1438 Trifolium pratense HOM05D007594 ORTHO05D009607 2.0e-37 162.2 885 25.4
Lalb_Chr24g0402831 Lupinus albus HOM05D007594 ORTHO05D009607 9.8e-37 159.8 851 27.3
Aqoxy1G00417 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 3.0e-33 148.3 525 28.8
MELO3C011810.2 Cucumis melo HOM05D007594 ORTHO05D009607 3.0e-33 148.3 769 26.3
Hund03164 Selenicereus undatus HOM05D007594 ORTHO05D009607 4.3e-32 144.4 167 44.9
Lalb_Chr24g0402821 Lupinus albus HOM05D007594 ORTHO05D009607 2.7e-26 125.2 137 46.7
Ca_14091_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 1.0e-25 123.2 775 25.7
CSS0016538 Camellia sinensis var. sinensis HOM05D007594 ORTHO05D009607 3.4e-21 108.2 97 53.6
Sc11g0006290 Simmondsia chinensis HOM05D007594 ORTHO05D009607 2.9e-20 105.1 349 30.1
Atru.chr12.1242 Acer truncatum HOM05D007594 ORTHO05D009607 3.5e-18 98.2 90 54.4
SEGI_38959 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 5.3e-14 84.3 77 42.9
COL.COLO4_04921 Corchorus olitorius HOM05D007594 ORTHO05D009607 2.2e-12 79.0 59 55.9
Lj2g0024514 Lotus japonicus HOM05D007594 ORTHO05D009607 4.9e-12 77.8 62 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2306 Anthoceros agrestis HOM05D007594 ORTHO05D009607 1.9e-11 75.9 164 27.4
ATR0445G001 Amborella trichopoda HOM05D007594 ORTHO05D009607 4.2e-11 74.7 173 34.1
Aqoxy1G00418 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 7.9e-10 70.5 53 60.4
SEGI_25891 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 6.2e-07 60.8 109 37.6
CBR_g49793 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-07 60.5 119 31.1
vmacro13770 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 1.8e-06 59.3 53 56.6


User provided reference genes

Program Settings