Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.4e-123 446.4 244 100.0
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 7.6e-122 440.7 246 97.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 6.0e-119 431.0 253 94.5
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.5e-111 405.2 250 89.6
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 4.9e-105 384.8 236 87.3
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 5.8e-98 361.3 233 82.4
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-97 360.1 248 78.6
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.6e-90 335.9 230 78.3
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 2.1e-87 326.2 230 75.2
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.7e-87 325.9 230 73.9
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 6.0e-87 324.7 225 80.0
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.9e-86 322.0 230 73.0
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.9e-86 322.0 230 73.5
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 5.1e-86 321.6 230 73.0
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 5.1e-86 321.6 230 72.6
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 5.7e-85 318.2 230 71.3
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 3.7e-84 315.5 235 71.1
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 6.3e-84 314.7 233 68.2
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 8.2e-84 314.3 232 71.6
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.4e-83 313.5 232 71.1
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 2.4e-83 312.8 233 74.2
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.1e-83 312.0 230 72.2
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.3e-83 311.6 230 72.2
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 5.3e-83 311.6 230 70.4
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 5.3e-83 311.6 232 69.4
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.2e-82 310.5 229 71.6
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.2e-82 310.5 232 70.3
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.5e-82 310.1 229 71.6
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.0e-82 309.7 230 67.0
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 7.6e-82 307.8 228 67.1
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.3e-81 307.0 235 68.9
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.3e-81 307.0 236 67.4
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.7e-81 306.6 228 66.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.7e-81 306.6 230 69.1
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 5.0e-81 305.1 227 70.0
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-80 303.9 230 66.1
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 3.2e-80 302.4 228 69.3
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.6e-79 300.1 230 66.5
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.7e-79 299.3 229 71.2
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 3.6e-79 298.9 230 68.3
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 6.1e-79 298.1 230 66.5
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.1e-79 298.1 230 68.3
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 7.9e-79 297.7 230 67.4
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 6.7e-78 294.7 226 67.3
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.5e-77 292.7 229 67.2
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.5e-77 292.7 230 65.2
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 7.4e-77 291.2 230 66.5
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 7.4e-77 291.2 229 66.8
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 3.7e-76 288.9 228 65.4
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.1e-75 285.4 230 67.0
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.2e-74 283.9 230 64.3
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.2e-74 283.9 227 66.1
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.2e-74 283.9 226 65.0
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 2.0e-74 283.1 227 64.8
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.6e-74 282.7 229 63.8
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 2.6e-74 282.7 258 63.2
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 3.4e-74 282.3 228 65.4
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 5.9e-74 281.6 230 61.7
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.0e-73 280.8 238 60.5
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.0e-73 280.8 230 62.6
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.0e-73 280.8 230 62.6
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.0e-73 280.8 235 66.4
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.3e-73 280.4 227 64.3
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.3e-73 280.4 232 66.4
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.2e-73 279.6 230 62.2
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.2e-73 279.6 238 60.5
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 2.2e-73 279.6 223 64.6
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.9e-73 279.3 230 62.2
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.8e-73 278.9 230 61.7
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 5.0e-73 278.5 233 61.8
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.5e-73 278.1 214 67.3
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 8.5e-73 277.7 230 61.3
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 8.5e-73 277.7 233 61.8
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.4e-72 276.9 230 64.8
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.4e-72 276.9 230 61.3
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.4e-72 276.9 233 63.1
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.9e-72 276.6 274 58.4
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.5e-72 276.2 229 61.6
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 2.5e-72 276.2 230 65.2
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.2e-72 275.8 230 62.2
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 3.2e-72 275.8 228 64.5
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 4.2e-72 275.4 232 62.1
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 7.2e-72 274.6 228 60.5
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-71 273.5 228 63.2
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-71 273.5 230 62.2
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.1e-71 273.1 227 63.4
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 2.1e-71 273.1 230 64.3
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 2.1e-71 273.1 231 64.1
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 4.7e-71 271.9 227 64.3
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.1e-71 271.6 233 60.1
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.0e-70 270.8 230 63.9
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.8e-70 270.0 228 62.7
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 3.0e-70 269.2 233 60.5
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 8.8e-70 267.7 228 59.6
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.6e-69 266.2 233 59.2
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.6e-69 266.2 230 61.3
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.7e-69 265.0 233 59.7
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 5.7e-69 265.0 227 62.6
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.7e-68 263.5 227 61.2
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 3.7e-68 262.3 230 62.2
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.8e-68 261.9 230 63.0
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 4.8e-68 261.9 232 57.8
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 2.4e-67 259.6 163 81.0
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 3.1e-67 259.2 228 62.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 4.1e-67 258.8 240 56.2
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 7.0e-67 258.1 230 62.2
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.5e-66 256.9 189 66.7
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.3e-65 253.8 230 61.7
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.1e-64 250.8 229 62.0
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.6e-63 246.9 251 62.5
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 1.6e-63 246.9 229 56.3
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 8.0e-63 244.6 232 55.2
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 5.2e-62 241.9 224 60.3
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 3.1e-59 232.6 178 71.3
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.0e-58 229.9 161 73.3
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.5e-58 228.8 163 69.3
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.9e-57 226.1 234 54.7
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 5.5e-56 221.9 236 55.5
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 9.4e-56 221.1 247 50.2
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.6e-55 220.3 248 49.6
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.6e-55 220.3 176 67.0
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 6.7e-54 214.9 159 70.4
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.7e-54 214.9 141 79.4
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.2e-52 209.9 179 64.8
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 4.1e-51 205.7 145 71.0
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 5.3e-51 205.3 154 67.5
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 7.0e-51 204.9 232 51.7
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.0e-46 191.0 191 56.5
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 3.0e-46 189.5 174 56.3
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-45 187.6 231 49.4
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 2.1e-39 166.8 232 48.3
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 6.1e-39 165.2 126 72.2
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.8e-38 161.8 141 63.8
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.2e-37 161.0 128 69.5
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.6e-37 159.8 227 42.7
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.4e-37 159.5 187 47.1
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 4.4e-37 159.1 193 47.7
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 5.7e-37 158.7 116 69.8
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.2e-36 156.8 115 68.7
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 3.7e-36 156.0 225 40.0
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.2e-34 151.0 152 56.6
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 2.0e-34 150.2 148 61.5
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 7.8e-34 148.3 115 67.0
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.7e-33 147.1 227 37.4
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 2.8e-31 139.8 177 46.9
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.4e-30 137.5 234 36.3
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.9e-28 129.0 90 74.4
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.3e-25 120.9 233 36.5
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.5e-24 114.8 178 43.3
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.6e-23 114.0 185 41.6
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.1e-23 113.6 181 40.9
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.4e-22 110.9 108 61.1
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.2e-21 107.8 146 43.2
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 1.9e-19 100.5 134 47.8
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 4.1e-19 99.4 119 44.5
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 9.2e-19 98.2 70 70.0
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.7e-18 96.7 88 59.1
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.7e-18 96.7 87 62.1
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.7e-18 96.7 87 62.1
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.8e-18 95.1 58 74.1
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 7.8e-18 95.1 82 65.9
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.9e-16 90.5 102 47.1
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-15 87.4 75 61.3
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 6.2e-15 85.5 53 77.4
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 8.1e-15 85.1 53 77.4
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 8.1e-15 85.1 53 77.4
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.1e-14 83.2 50 74.0
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 4.0e-14 82.8 52 75.0
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.2e-13 81.3 211 30.8
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.2e-13 81.3 211 30.8
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 3.4e-13 79.7 87 51.7
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 5.8e-13 79.0 53 71.7
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 1.9e-11 73.9 77 55.8
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.4e-11 73.6 90 50.0
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 2.4e-11 73.6 86 47.7
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 5.4e-11 72.4 99 42.4
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.2e-10 71.2 52 69.2
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 6.0e-10 68.9 78 50.0
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 8.6e-09 65.1 128 38.3
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 5.6e-08 62.4 79 43.0
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 5.6e-08 62.4 45 71.1
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 1.2e-07 61.2 44 70.5
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 1.4e-06 57.8 41 65.9
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 8.9e-06 55.1 44 63.6


User provided reference genes

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