Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 1.9e-59 232.3 112 100.0
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 2.7e-58 228.4 112 98.2
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 1.0e-57 226.5 112 97.3
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 6.2e-55 217.2 112 91.1
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 1.5e-53 212.6 112 89.3
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 7.6e-53 210.3 112 88.4
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.0e-52 209.9 112 87.5
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 85.7
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 85.7
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 85.7
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 85.7
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 8.4e-52 206.8 112 86.6
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.1e-51 206.5 111 84.7
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.4e-51 206.1 112 84.8
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 1.4e-51 206.1 112 85.7
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 1.4e-51 206.1 112 84.8
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 2.5e-51 205.3 112 85.7
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 3.2e-51 204.9 112 85.7
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 3.2e-51 204.9 112 84.8
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 4.2e-51 204.5 112 83.0
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 4.2e-51 204.5 112 84.8
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 5.5e-51 204.1 112 84.8
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 5.5e-51 204.1 112 83.9
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 7.1e-51 203.8 112 83.9
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 1.2e-50 203.0 112 83.9
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 1.6e-50 202.6 112 82.1
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 2.1e-50 202.2 112 83.0
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 2.1e-50 202.2 112 81.2
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 2.1e-50 202.2 112 82.1
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 2.1e-50 202.2 112 83.9
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 83.0
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 82.1
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 85.7
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 6.0e-50 200.7 112 82.1
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 7.9e-50 200.3 112 82.1
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.0e-49 199.9 112 82.1
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 1.0e-49 199.9 112 81.2
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 1.0e-49 199.9 112 83.9
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.0e-49 199.9 112 83.0
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 1.0e-49 199.9 112 82.1
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 1.3e-49 199.5 112 83.0
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 82.1
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 81.2
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 2.3e-49 198.7 112 83.9
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 83.0
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 83.0
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 3.0e-49 198.4 112 81.2
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 3.0e-49 198.4 112 82.1
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 80.4
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 80.4
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 80.4
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 3.9e-49 198.0 110 83.6
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 79.5
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 83.0
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 80.4
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 82.1
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 79.5
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 8.7e-49 196.8 117 81.2
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 8.7e-49 196.8 112 81.2
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 1.1e-48 196.4 112 79.5
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 1.1e-48 196.4 112 79.5
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 80.4
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 79.5
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 79.5
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 82.1
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 1.9e-48 195.7 112 79.5
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 1.9e-48 195.7 112 81.2
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 80.4
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 4.3e-48 194.5 112 79.5
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 5.7e-48 194.1 112 79.5
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 1.3e-47 193.0 112 80.4
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.6e-47 192.6 111 80.2
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 2.8e-47 191.8 112 79.5
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 2.8e-47 191.8 145 67.6
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 3.1e-46 188.3 127 72.4
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 4.1e-46 188.0 111 77.5
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 6.9e-46 187.2 141 66.0
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 9.0e-46 186.8 100 88.0
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 9.0e-46 186.8 127 71.7
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 9.0e-46 186.8 127 71.7
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 1.5e-45 186.0 139 68.3
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 4.5e-45 184.5 112 78.6
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 4.5e-45 184.5 112 76.8
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 2.9e-44 181.8 107 77.6
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 8.5e-44 180.3 107 76.6
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 3.2e-43 178.3 98 85.7
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 1.2e-42 176.4 112 72.3
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 2.7e-42 175.3 110 74.5
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 3.6e-42 174.9 112 72.3
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 3.6e-42 174.9 112 72.3
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 3.6e-42 174.9 112 72.3
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 2.3e-41 172.2 112 69.6
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 2.5e-40 168.7 98 80.6
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 2.5e-40 168.7 98 79.6
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 4.3e-40 167.9 96 80.2
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 4.8e-39 164.5 99 77.8
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 1.2e-37 159.8 130 60.8
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 7.7e-37 157.1 155 51.0
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 5.5e-35 151.0 108 64.8
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 4.7e-34 147.9 111 63.1
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 1.0e-33 146.7 88 71.6
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 1.8e-33 146.0 79 82.3
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 1.1e-32 143.3 109 64.2
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 2.0e-32 142.5 79 81.0
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 2.2e-31 139.0 79 77.2
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.2e-31 139.0 98 66.3
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 6.3e-31 137.5 75 88.0
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 1.7e-28 129.4 108 54.6
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 8.5e-28 127.1 75 82.7
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 6.1e-26 120.9 64 81.2
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 1.4e-25 119.8 109 56.0
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 6.7e-25 117.5 64 76.6
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.1e-24 116.7 64 75.0
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.0e-24 115.9 64 75.0
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 3.3e-24 115.2 69 79.7
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.7e-23 112.8 64 73.4
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 1.7e-23 112.8 65 73.8
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 8.2e-23 110.5 64 75.0
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 5.3e-22 107.8 63 74.6
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 5.3e-22 107.8 64 65.6
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 2.1e-18 95.9 50 86.0
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 1.4e-17 93.2 155 41.9
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.8e-17 92.8 106 46.2
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.8e-17 92.8 106 46.2
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 4.5e-13 78.2 45 82.2
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 3.8e-12 75.1 40 82.5
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 5.2e-09 64.7 37 70.3
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 6.8e-09 64.3 50 68.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 6.8e-09 64.3 50 68.0


User provided reference genes

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