Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 1.1e-227 793.5 531 100.0
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 1.6e-218 763.1 531 96.4
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 9.8e-152 541.2 533 76.2
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 6.7e-108 395.6 195 98.5
Solyc07g045410.2 Solanum lycopersicum HOM05D005764 ORTHO05D006600 3.9e-92 343.2 315 92.7
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 7.4e-83 312.4 374 59.4
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.4e-81 307.4 371 74.9
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 9.1e-81 305.4 371 74.9
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 9.2e-49 199.1 229 45.9
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 4.0e-44 183.7 229 44.5
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 4.0e-44 183.7 229 44.5
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 8.9e-44 182.6 247 39.3
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 4.9e-42 176.8 223 43.0
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 4.9e-42 176.8 212 43.4
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.1e-41 175.6 226 42.0
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 2.4e-41 174.5 212 42.9
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 4.6e-40 170.2 254 38.6
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 6.0e-40 169.9 228 42.5
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 7.8e-40 169.5 212 42.0
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.0e-39 169.1 220 40.5
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 1.5e-38 165.2 216 42.6
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 1.9e-38 164.9 214 41.1
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.8e-37 161.0 239 36.0
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 3.6e-37 160.6 223 39.5
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 1.4e-36 158.7 212 39.6
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 4.0e-36 157.1 204 41.7
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 5.2e-36 156.8 214 41.6
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.5e-35 155.2 239 35.1
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 2.6e-35 154.5 226 40.7
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 2.6e-35 154.5 214 41.1
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 7.5e-35 152.9 216 38.9
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 2.2e-34 151.4 214 40.7
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 1.4e-33 148.7 220 40.0
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 1.9e-33 148.3 231 37.7
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 1.9e-33 148.3 214 42.1
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 5.4e-33 146.7 229 35.4
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 7.1e-33 146.4 223 39.5
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 7.1e-33 146.4 236 36.0
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 1.2e-32 145.6 213 39.9
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.2e-32 145.6 213 40.4
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 1.6e-32 145.2 247 36.0
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 1.6e-32 145.2 216 34.3
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 2.1e-32 144.8 236 38.6
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 2.7e-32 144.4 212 40.1
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 3.5e-32 144.1 233 36.5
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 3.5e-32 144.1 214 37.4
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 1.3e-31 142.1 224 37.9
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 2.3e-31 141.4 207 41.1
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 3.0e-31 141.0 219 37.9
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 3.9e-31 140.6 229 38.9
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 5.1e-31 140.2 251 37.8
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 6.6e-31 139.8 212 37.7
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 8.6e-31 139.4 213 37.1
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 8.6e-31 139.4 205 38.5
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.5e-30 138.7 192 40.1
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 1.5e-30 138.7 215 38.6
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 9.5e-30 136.0 256 34.4
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 1.2e-29 135.6 202 37.6
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 2.1e-29 134.8 214 37.4
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 2.8e-29 134.4 225 35.1
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 6.2e-29 133.3 218 38.1
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 8.1e-29 132.9 194 37.6
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 8.1e-29 132.9 214 36.4
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.1e-28 132.5 194 39.2
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.1e-28 132.5 194 39.2
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 1.1e-28 132.5 225 33.8
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 1.1e-28 132.5 253 32.8
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.4e-28 132.1 196 38.8
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 3.1e-28 131.0 253 32.0
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 3.1e-28 131.0 205 37.1
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 4.0e-28 130.6 211 39.8
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 5.2e-28 130.2 205 37.1
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 6.8e-28 129.8 211 37.9
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 2.0e-27 128.3 211 38.9
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 5.8e-27 126.7 237 35.9
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 9.9e-27 125.9 195 36.9
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 1.3e-26 125.6 211 38.4
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 1.3e-26 125.6 209 36.4
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 1.7e-26 125.2 212 38.2
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 2.9e-26 124.4 239 34.3
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 6.4e-26 123.2 213 36.2
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.1e-25 122.5 204 38.7
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 1.9e-25 121.7 211 37.9
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 7.1e-25 119.8 211 37.0
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 1.6e-24 118.6 211 35.1
Lsat_1_v5_gn_9_103540 Lactuca sativa HOM05D005764 ORTHO05D006600 3.5e-24 117.5 219 30.1
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 4.6e-24 117.1 218 32.6
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.0e-23 115.9 211 35.1
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 1.0e-23 115.9 231 34.2
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 1.1e-22 112.5 208 36.1
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 1.1e-22 112.5 208 36.1
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 2.5e-22 111.3 185 37.8
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 3.3e-22 110.9 213 34.3
Lsat_1_v5_gn_4_84661 Lactuca sativa HOM05D005764 ORTHO05D006600 1.6e-21 108.6 225 32.4
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 3.6e-21 107.5 166 40.4
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 6.2e-21 106.7 200 35.0
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 8.1e-21 106.3 200 35.0
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.8e-20 105.1 140 43.6
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 1.2e-19 102.4 196 34.2
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.2e-19 102.4 186 34.9
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 9.9e-19 99.4 209 34.0
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 4.9e-18 97.1 216 31.5
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 4.2e-17 94.0 160 34.4
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 1.6e-16 92.0 118 43.2
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 2.1e-16 91.7 153 36.6
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 2.7e-16 91.3 216 31.0
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 2.3e-15 88.2 206 29.1
Atru.chr1.4150 Acer truncatum HOM05D005764 ORTHO05D006600 5.1e-15 87.0 151 36.4
Sc17g0007100 Simmondsia chinensis HOM05D007956 ORTHO05D010152 8.1e-13 79.7 200 29.0
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 4.0e-12 77.4 215 23.7
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 1.2e-11 75.9 119 37.0
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 3.4e-11 74.3 207 23.7
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 4.4e-11 73.9 221 26.2
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 4.4e-11 73.9 128 33.6
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 5.8e-11 73.6 208 26.0
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 9.9e-11 72.8 149 31.5
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 1.3e-10 72.4 232 25.9
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 3.8e-10 70.9 219 25.1
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.4e-09 68.2 213 25.8
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 3.2e-09 67.8 129 32.6
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 5.4e-09 67.0 230 25.7
Haze_06747 Corylus avellana HOM05D007956 ORTHO05D010152 1.2e-08 65.9 197 25.9
Cfa000267 Carpinus fangiana HOM05D007956 ORTHO05D010152 2.7e-08 64.7 205 24.4
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 2.7e-08 64.7 198 25.3
Actinidia05532 Actinidia chinensis HOM05D007956 ORTHO05D010152 4.6e-08 63.9 226 25.7
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 4.6e-08 63.9 171 23.4
ECA248G1009 Erigeron canadensis HOM05D005764 ORTHO05D006600 7.9e-08 63.2 96 35.4
vmacro03705 Vaccinium macrocarpon HOM05D007956 ORTHO05D010152 1.0e-07 62.8 208 23.6
Manes.12G158300 Manihot esculenta HOM05D007173 ORTHO05D009151 1.7e-07 62.0 191 26.2
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 2.3e-07 61.6 158 23.4
Eucgr.K02196 Eucalyptus grandis HOM05D005764 ORTHO05D006600 3.0e-07 61.2 103 36.9
HPP92_025492 Vanilla planifolia HOM05D005764 ORTHO05D006600 6.6e-07 60.1 106 31.1
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 8.7e-07 59.7 150 32.0
ECA232G4944 Erigeron canadensis HOM05D000422 ORTHO05D006600 1.5e-06 58.9 80 36.2
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 1.5e-06 58.9 176 24.4
Manes.15G186000 Manihot esculenta HOM05D007173 ORTHO05D009151 1.9e-06 58.5 188 25.0
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 1.9e-06 58.5 182 25.3
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 3.3e-06 57.8 213 26.3
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 4.3e-06 57.4 233 21.5
RcHm_v2.0_Chr5g0003911 Rosa chinensis HOM05D007956 ORTHO05D010152 9.6e-06 56.2 207 23.2


User provided reference genes

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