Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 0.0e+00 1242.6 632 100.0
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 0.0e+00 1208.4 632 97.9
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 0.0e+00 1182.2 639 95.3
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 1.0e-303 1046.2 629 85.9
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 9.6e-270 933.3 648 76.4
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 2.3e-263 912.1 634 77.0
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 2.2e-226 789.3 637 68.3
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 1.1e-159 567.8 640 51.4
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 1.6e-155 553.9 640 48.9
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 4.5e-150 535.8 648 49.2
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 2.9e-149 533.1 637 49.0
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 6.5e-149 531.9 636 48.4
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 9.7e-145 518.1 643 48.7
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 1.9e-140 503.8 645 46.0
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 4.2e-140 502.7 666 45.6
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 7.4e-137 491.9 640 46.7
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 2.8e-136 490.0 659 45.7
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 8.2e-136 488.4 651 44.2
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 8.2e-136 488.4 652 44.2
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 3.1e-135 486.5 658 46.0
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 5.3e-135 485.7 667 45.1
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 6.9e-135 485.3 651 44.2
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 1.2e-134 484.6 640 47.2
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 1.2e-134 484.6 652 44.8
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.0e-134 483.8 666 45.0
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 2.6e-134 483.4 624 47.0
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 5.9e-134 482.3 640 44.7
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.0e-133 481.5 660 45.6
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.0e-133 481.5 661 46.0
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 3.8e-133 479.6 660 45.3
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 3.8e-133 479.6 671 44.3
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 6.5e-133 478.8 669 44.8
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 8.5e-133 478.4 639 46.2
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 3.2e-132 476.5 644 45.7
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 7.2e-132 475.3 661 45.5
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 2.0e-129 467.2 653 44.3
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 4.4e-129 466.1 657 44.1
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 8.2e-128 461.8 658 45.0
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 2.0e-126 457.2 668 41.9
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 1.0e-125 454.9 642 42.2
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 1.0e-125 454.9 642 42.2
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 2.2e-125 453.8 637 43.3
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 2.9e-125 453.4 657 42.9
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 6.5e-125 452.2 639 44.8
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 1.4e-124 451.1 644 43.0
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 3.2e-124 449.9 649 43.1
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 1.2e-123 448.0 699 41.6
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 3.0e-122 443.4 651 41.9
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 3.9e-122 443.0 576 47.2
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 5.2e-122 442.6 540 50.2
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 8.8e-122 441.8 655 42.4
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 8.8e-122 441.8 556 47.7
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.1e-121 441.4 707 42.0
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 7.4e-121 438.7 656 41.8
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 7.4e-121 438.7 631 41.8
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 9.7e-121 438.3 649 42.2
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 9.1e-119 431.8 600 44.2
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 1.6e-118 431.0 660 43.5
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 8.5e-117 425.2 635 40.6
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 3.6e-115 419.9 656 43.0
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 1.4e-114 417.9 643 40.3
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 2.3e-114 417.2 653 41.5
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 4.0e-114 416.4 657 42.0
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 6.7e-114 415.6 659 42.3
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 6.7e-114 415.6 638 40.8
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 1.5e-113 414.5 630 41.1
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 2.8e-112 410.2 638 40.3
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 8.2e-112 408.7 350 60.9
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 2.4e-111 407.1 650 40.2
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 2.4e-111 407.1 636 40.1
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 3.5e-110 403.3 351 60.7
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 1.5e-108 397.9 634 39.6
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 2.7e-107 393.7 458 48.7
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 6.1e-107 392.5 506 48.6
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 3.0e-106 390.2 624 38.5
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 4.0e-106 389.8 627 39.1
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 2.2e-104 384.0 624 38.5
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 2.2e-104 384.0 634 39.4
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 2.8e-104 383.6 653 39.1
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.1e-103 381.7 654 38.1
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 1.1e-103 381.7 619 37.8
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 3.1e-103 380.2 625 37.9
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 4.1e-103 379.8 626 37.2
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 1.6e-102 377.9 625 38.9
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 2.0e-102 377.5 624 37.7
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.0e-101 375.2 695 37.7
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 2.9e-101 373.6 644 37.6
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 4.2e-100 369.8 545 44.8
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 5.5e-100 369.4 543 42.5
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 2.1e-99 367.5 631 38.4
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 2.8e-99 367.1 624 38.1
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 4.7e-99 366.3 624 38.3
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 3.0e-98 363.6 649 36.2
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 1.2e-97 361.7 624 37.7
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 3.4e-97 360.1 644 37.6
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 5.6e-92 342.8 629 38.6
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 7.3e-92 342.4 381 50.4
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 1.8e-90 337.8 626 37.1
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 5.4e-87 326.2 636 36.6
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 2.1e-83 314.3 632 36.9
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 4.0e-82 310.1 618 36.1
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 4.4e-81 306.6 628 35.5
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 3.4e-73 280.4 455 39.8
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 1.6e-67 261.5 214 60.3
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 4.4e-65 253.4 415 39.5
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 3.8e-64 250.4 164 76.8
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 2.3e-61 241.1 595 30.8
PGSC0003DMG400035925 Solanum tuberosum HOM05D005152 ORTHO05D006162 1.2e-49 202.2 120 88.3
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 2.9e-48 197.6 661 27.2
CAN.G437.19 Capsicum annuum HOM05D005152 ORTHO05D006162 4.2e-47 193.7 122 77.9
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.0e-45 189.1 169 55.6
SGA_v2.0_scaffold96G29125 Striga asiatica HOM05D005152 ORTHO05D006162 2.5e-44 184.5 145 66.9
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 1.3e-43 182.2 431 33.9
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 2.4e-42 177.9 412 29.4
Rhsim13G0207500 Rhododendron simsii HOM05D005152 ORTHO05D006162 4.0e-42 177.2 286 42.3
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 1.7e-40 171.8 456 29.2
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 1.6e-38 165.2 337 31.8
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 3.5e-38 164.1 389 32.4
Sc09g0005650 Simmondsia chinensis HOM05D005152 ORTHO05D006162 7.9e-38 162.9 248 39.5
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 1.3e-35 155.6 318 28.3
SGA_v2.0_scaffold79G25574 Striga asiatica HOM05D005152 ORTHO05D006162 1.1e-34 152.5 112 67.9
Sabra16G0168500 Salix brachista HOM05D005152 ORTHO05D006162 1.2e-33 149.1 440 32.5
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 7.6e-33 146.4 350 32.9
MCO05G618 Micromonas commoda HOM05D005152 ORTHO05D006162 3.3e-28 131.0 161 40.4
MD08G1241100 Malus domestica HOM05D005152 ORTHO05D006162 4.3e-28 130.6 233 37.8
Oeu046803.1 Olea europaea HOM05D005152 ORTHO05D006162 9.7e-28 129.4 87 72.4
GSVIVG01029301001 Vitis vinifera HOM05D005152 ORTHO05D006162 1.0e-24 119.4 86 68.6
Oeu053695.1 Olea europaea HOM05D005152 ORTHO05D006162 9.4e-23 112.8 179 39.7
Hma1.2p1_0460F.1_g157490 Hydrangea macrophylla HOM05D005152 ORTHO05D006162 1.2e-22 112.5 167 43.1
Atru.chr11.1397 Acer truncatum HOM05D005152 ORTHO05D006162 1.4e-21 109.0 165 39.4
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.8e-21 108.6 314 29.0
Cre01.g002201 Chlamydomonas reinhardtii HOM05D005152 ORTHO05D006162 3.3e-20 104.4 224 27.2
Sc09g0005720 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.0e-17 95.1 72 58.3
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 7.7e-17 93.2 75 57.3
Atru.chr11.1398 Acer truncatum HOM05D005152 ORTHO05D006162 1.4e-15 89.0 164 37.2
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.7e-14 84.7 184 31.0
Hund07429 Selenicereus undatus HOM05D005152 ORTHO05D006162 3.3e-12 77.8 110 45.5
Aqoxy4G01955 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 2.2e-11 75.1 67 56.7
CAN.G280.28 Capsicum annuum HOM05D005152 ORTHO05D006162 2.4e-10 71.6 67 56.7
CBR_g41105 Chara braunii HOM05D001740 ORTHO05D001468 1.0e-08 66.2 155 27.1
Cfa025982 Carpinus fangiana HOM05D005152 ORTHO05D006162 2.5e-07 61.6 159 24.5
Cpa.g.sc189.1 Carica papaya HOM05D005152 ORTHO05D006162 4.2e-07 60.8 59 52.5
Cpa.g.c26789.1 Carica papaya HOM05D005152 ORTHO05D006162 9.4e-07 59.7 59 54.2
Sc09g0001090 Simmondsia chinensis HOM05D005152 ORTHO05D006162 9.4e-07 59.7 102 35.3


User provided reference genes

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