Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 1.8e-237 825.5 410 100.0
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 9.4e-234 813.1 410 98.0
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 8.1e-161 570.9 382 75.4
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 5.1e-155 551.6 320 85.3
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 1.2e-127 460.7 403 60.8
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.3e-126 457.2 347 69.2
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.9e-125 453.4 404 59.2
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 3.6e-124 449.1 400 56.5
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 2.8e-121 439.5 397 57.2
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 8.2e-121 438.0 396 56.8
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.4e-112 409.8 478 48.5
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.7e-108 396.4 531 44.1
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.8e-75 287.3 416 39.2
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 2.0e-74 283.9 407 39.1
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 6.4e-73 278.9 410 39.0
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 3.2e-72 276.6 414 38.6
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 3.0e-70 270.0 403 39.2
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 3.6e-68 263.1 396 36.9
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 6.8e-67 258.8 398 36.7
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.2e-66 258.1 398 36.7
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 3.4e-66 256.5 432 35.6
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 4.4e-66 256.1 392 35.7
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 2.2e-65 253.8 409 35.7
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 6.4e-65 252.3 436 34.9
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 8.4e-65 251.9 400 34.2
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 1.4e-64 251.1 421 35.9
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 7.1e-64 248.8 412 35.4
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 1.3e-62 244.6 402 35.3
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 1.7e-62 244.2 404 37.1
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 5.1e-62 242.7 397 36.5
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 1.1e-59 235.0 400 35.0
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 1.4e-59 234.6 408 35.5
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 6.9e-59 232.3 172 70.9
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 9.0e-59 231.9 402 33.6
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 3.4e-58 229.9 391 33.2
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 4.4e-58 229.6 397 34.3
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 4.4e-58 229.6 410 33.2
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.8e-58 229.2 410 34.1
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 9.9e-58 228.4 419 33.4
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 9.9e-58 228.4 396 35.9
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.7e-57 227.6 397 34.3
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.7e-57 227.6 397 34.3
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 2.2e-57 227.3 404 33.4
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 2.9e-57 226.9 397 33.8
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 3.8e-57 226.5 408 33.3
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 4.9e-57 226.1 409 34.5
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 8.4e-57 225.3 370 37.6
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.2e-56 223.4 401 33.7
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 9.3e-56 221.9 390 33.6
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 3.5e-55 219.9 388 36.3
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 6.0e-55 219.2 390 34.4
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 6.0e-55 219.2 343 35.0
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 3.0e-54 216.9 406 33.0
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 6.6e-54 215.7 390 33.8
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 6.6e-54 215.7 412 33.0
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 1.5e-53 214.5 410 32.2
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 1.5e-53 214.5 410 33.4
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 2.5e-53 213.8 388 36.1
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 4.3e-53 213.0 409 33.0
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 2.1e-52 210.7 401 32.2
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.8e-52 210.3 188 53.2
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.8e-52 209.5 397 32.2
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 8.1e-52 208.8 398 33.4
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.1e-52 208.8 397 32.7
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 1.4e-51 208.0 394 32.0
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 1.4e-51 208.0 401 30.4
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 1.8e-51 207.6 405 31.6
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 2.4e-51 207.2 393 31.3
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 2.0e-50 204.1 404 31.7
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 5.8e-50 202.6 396 32.3
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 3.8e-49 199.9 396 31.6
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 4.9e-49 199.5 404 30.7
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 6.4e-49 199.1 433 30.5
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 8.4e-49 198.7 433 31.2
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 2.4e-48 197.2 394 30.7
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 3.2e-48 196.8 327 36.4
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 3.2e-48 196.8 396 31.6
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 7.1e-48 195.7 391 31.5
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 3.5e-47 193.4 386 33.9
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 4.6e-47 193.0 434 30.6
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 2.3e-46 190.7 386 33.7
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 3.0e-46 190.3 393 30.8
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 5.1e-46 189.5 429 28.2
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 8.7e-46 188.7 331 32.9
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 9.6e-45 185.3 438 28.3
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 2.1e-44 184.1 412 29.6
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 4.8e-44 183.0 326 32.2
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 1.0e-41 175.3 396 30.8
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.2e-41 174.1 418 27.8
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 2.2e-41 174.1 401 28.7
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 2.9e-41 173.7 372 30.4
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 4.9e-41 172.9 558 25.4
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 2.5e-40 170.6 414 26.6
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.5e-40 170.6 414 26.6
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 5.5e-40 169.5 426 26.8
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 9.3e-40 168.7 371 28.6
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.3e-40 168.7 407 27.3
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 9.3e-40 168.7 332 33.4
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 8.7e-38 162.2 399 28.6
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 2.0e-34 151.0 422 27.0
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.5e-34 149.8 354 28.2
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.0e-33 148.7 433 25.2
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.4e-32 144.8 456 24.8
CAN.G437.8 Capsicum annuum HOM05D003575 ORTHO05D003587 2.7e-31 140.6 94 79.8
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 4.6e-31 139.8 180 36.7
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 1.3e-30 138.3 193 40.9
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 1.8e-30 137.9 282 31.9
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 3.0e-30 137.1 390 28.2
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 5.1e-30 136.3 261 33.3
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 6.7e-30 136.0 350 25.1
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.7e-30 136.0 401 27.2
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 8.7e-30 135.6 164 39.6
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.5e-29 134.8 392 26.5
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 9.7e-29 132.1 173 40.5
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 3.7e-28 130.2 167 35.9
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.1e-27 126.7 336 26.5
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 2.0e-26 124.4 188 35.1
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.3e-25 121.7 172 37.2
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 1.3e-25 121.7 171 38.0
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 3.8e-25 120.2 163 35.6
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 6.5e-25 119.4 166 34.9
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 6.5e-25 119.4 172 42.4
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 8.5e-25 119.0 289 30.1
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 1.1e-24 118.6 166 34.9
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 1.1e-24 118.6 166 34.9
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 1.1e-24 118.6 166 34.9
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-24 118.2 183 36.1
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-24 118.2 183 36.1
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-24 117.9 174 37.9
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 2.5e-24 117.5 201 29.9
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 2.5e-24 117.5 153 40.5
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 3.2e-24 117.1 168 33.9
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 3.2e-24 117.1 380 23.9
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.2e-24 116.7 185 37.3
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 5.5e-24 116.3 166 34.9
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 9.4e-24 115.5 160 38.8
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 9.4e-24 115.5 113 49.6
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.2e-23 115.2 152 37.5
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-23 115.2 166 36.1
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 2.1e-23 114.4 168 33.3
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 2.1e-23 114.4 153 39.9
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 7.9e-23 112.5 196 30.1
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 1.8e-22 111.3 172 32.0
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 1.1e-21 108.6 177 35.0
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 1.5e-21 108.2 163 33.1
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 3.3e-21 107.1 173 30.6
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 7.4e-21 105.9 170 34.7
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-20 105.1 195 31.3
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 2.8e-20 104.0 177 34.5
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 1.1e-19 102.1 181 35.9
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 1.4e-19 101.7 181 30.4
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 1.8e-19 101.3 101 48.5
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 2.6e-18 97.4 150 34.0
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 7.7e-18 95.9 161 33.5
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 1.3e-17 95.1 101 43.6
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 5.0e-17 93.2 154 34.4
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 1.1e-16 92.0 161 35.4
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 1.1e-16 92.0 161 30.4
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.5e-16 90.9 169 33.1
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.2e-16 90.5 169 33.1
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 5.5e-16 89.7 197 29.9
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.5e-16 89.7 169 33.1
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 9.4e-16 89.0 166 31.3
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.6e-15 88.2 120 40.0
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 2.1e-15 87.8 128 32.0
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 6.1e-15 86.3 108 43.5
Oeu041110.1 Olea europaea HOM05D003575 ORTHO05D003587 1.8e-14 84.7 130 35.4
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 1.5e-13 81.6 99 41.4
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 7.4e-13 79.3 100 37.0
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 9.7e-13 79.0 164 29.9
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 7.0e-11 72.8 102 37.3
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 2.0e-10 71.2 93 36.6
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 2.0e-10 71.2 93 36.6
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.0e-10 71.2 219 23.3
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 1.7e-09 68.2 137 29.9
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 2.9e-09 67.4 153 28.8
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.8e-09 67.0 95 32.6
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 3.8e-09 67.0 135 29.6
Mapoly0072s0063 Marchantia polymorpha HOM05D040683 ORTHO05D003587 8.5e-09 65.9 220 27.7
Dinv26594 Davidia involucrata HOM05D000074 ORTHO05D001293 1.9e-08 64.7 79 45.6
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 3.2e-08 63.9 97 33.0
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 5.5e-08 63.2 97 39.2
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 1.2e-07 62.0 64 50.0
EL10Ac6g15056 Beta vulgaris HOM05D003575 ORTHO05D003587 2.1e-07 61.2 68 35.3
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 5.2e-06 56.6 72 40.3
MD09G1128900 Malus domestica HOM05D003575 ORTHO05D003587 6.7e-06 56.2 71 36.6


User provided reference genes

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