Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 1.6e-43 179.1 93 100.0
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 3.7e-29 131.3 93 74.2
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.6e-24 115.9 60 98.3
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 2.3e-18 95.5 93 61.3
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 8.6e-18 93.6 93 58.1
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.6e-16 89.4 100 55.0
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 2.1e-16 89.0 100 55.0
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 6.2e-16 87.4 78 62.8
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.3e-13 79.7 77 61.0
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.9e-13 78.6 98 53.1
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 8.4e-13 77.0 81 55.6
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.1e-12 76.6 77 59.7
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 2.4e-12 75.5 90 55.6
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.6e-11 72.8 74 56.8
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 2.1e-11 72.4 60 66.7
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.3e-10 68.9 72 54.2
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.0e-10 68.6 95 44.2
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 5.1e-10 67.8 78 55.1
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 5.1e-10 67.8 79 51.9
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 8.7e-10 67.0 96 42.7
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 1.1e-09 66.6 79 54.4
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.5e-09 66.2 63 60.3
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 3.3e-09 65.1 56 60.7
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 4.3e-09 64.7 58 58.6
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 4.3e-09 64.7 57 59.6
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 9.6e-09 63.5 74 50.0
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 9.6e-09 63.5 56 58.9
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 9.6e-09 63.5 63 60.3
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 1.3e-08 63.2 94 44.7
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.6e-08 62.8 97 45.4
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.1e-08 62.4 72 55.6
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.1e-08 62.4 78 53.8
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.1e-08 62.4 78 53.8
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.1e-08 62.4 74 51.4
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 2.1e-08 62.4 58 62.1
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 2.1e-08 62.4 47 63.8
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 2.8e-08 62.0 85 47.1
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 2.8e-08 62.0 53 60.4
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 3.6e-08 61.6 50 64.0
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 3.6e-08 61.6 85 48.2
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 4.8e-08 61.2 52 63.5
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 4.8e-08 61.2 44 65.9
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 4.8e-08 61.2 90 46.7
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 4.8e-08 61.2 90 46.7
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 4.8e-08 61.2 90 46.7
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 4.8e-08 61.2 90 46.7
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 6.2e-08 60.8 68 52.9
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 6.2e-08 60.8 52 63.5
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 6.2e-08 60.8 74 50.0
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 6.2e-08 60.8 75 48.0
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 8.1e-08 60.5 74 50.0
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 8.1e-08 60.5 45 68.9
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 1.1e-07 60.1 60 55.0
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.1e-07 60.1 54 61.1
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 1.1e-07 60.1 87 47.1
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.1e-07 60.1 88 45.5
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.1e-07 60.1 80 50.0
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 1.1e-07 60.1 68 52.9
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 1.1e-07 60.1 55 54.5
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 2.4e-07 58.9 60 56.7
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 2.4e-07 58.9 43 65.1
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 2.4e-07 58.9 56 60.7
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 3.1e-07 58.5 102 42.2
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 3.1e-07 58.5 53 56.6
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 3.1e-07 58.5 74 47.3
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 4.0e-07 58.2 44 61.4
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 4.0e-07 58.2 87 43.7
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 5.3e-07 57.8 86 47.7
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 5.3e-07 57.8 50 58.0
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 5.3e-07 57.8 52 61.5
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 6.9e-07 57.4 90 45.6
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 6.9e-07 57.4 80 43.8
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 9.0e-07 57.0 56 55.4
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 1.2e-06 56.6 46 60.9
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 1.2e-06 56.6 46 60.9
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 1.2e-06 56.6 50 58.0
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 1.2e-06 56.6 41 68.3
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 1.2e-06 56.6 41 68.3
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.2e-06 56.6 54 55.6
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 1.2e-06 56.6 66 53.0
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 1.2e-06 56.6 86 41.9
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 1.5e-06 56.2 50 68.0
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.5e-06 56.2 39 64.1
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.5e-06 56.2 53 60.4
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.5e-06 56.2 76 46.1
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.5e-06 56.2 59 59.3
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.5e-06 56.2 67 46.3
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 1.5e-06 56.2 32 78.1
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 2.0e-06 55.8 49 59.2
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 2.0e-06 55.8 56 53.6
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 2.0e-06 55.8 76 47.4
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 2.6e-06 55.5 51 58.8
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 2.6e-06 55.5 86 46.5
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 2.6e-06 55.5 64 48.4
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 2.6e-06 55.5 90 40.0
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 3.4e-06 55.1 60 51.7
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.4e-06 55.1 32 78.1
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 3.4e-06 55.1 48 58.3
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 3.4e-06 55.1 41 65.9
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 4.4e-06 54.7 46 56.5
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 4.4e-06 54.7 47 55.3
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.4e-06 54.7 54 53.7
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 4.4e-06 54.7 54 53.7
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 5.8e-06 54.3 49 59.2
ECA236G2479 Erigeron canadensis HOM05D006736 ORTHO05D008459 5.8e-06 54.3 41 63.4
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 5.8e-06 54.3 50 58.0
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 5.8e-06 54.3 46 58.7
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 7.6e-06 53.9 43 60.5
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 7.6e-06 53.9 84 42.9
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 7.6e-06 53.9 46 60.9
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 7.6e-06 53.9 82 46.3
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 9.9e-06 53.5 50 56.0
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 9.9e-06 53.5 74 43.2
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 9.9e-06 53.5 80 40.0
HanXRQChr03g0080371 Helianthus annuus HOM05D007247 ORTHO05D009208 9.9e-06 53.5 63 44.4
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 9.9e-06 53.5 42 61.9
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 9.9e-06 53.5 74 44.6


User provided reference genes

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