Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.2e-129 466.5 235 100.0
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 8.0e-129 463.8 235 99.1
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 2.2e-126 455.7 235 96.6
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 3.0e-115 418.7 226 91.2
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 5.6e-114 414.5 235 89.8
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 4.1e-109 398.3 226 87.6
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 6.6e-107 391.0 225 84.4
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.5e-106 389.8 225 83.1
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 1.9e-106 389.4 225 84.0
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 7.3e-106 387.5 225 83.1
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.2e-105 386.7 226 82.7
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.1e-105 386.0 225 82.2
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 2.8e-105 385.6 222 83.8
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 2.8e-105 385.6 225 83.1
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 1.1e-104 383.6 224 81.2
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 1.4e-104 383.3 225 83.1
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 1.8e-104 382.9 234 79.1
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 2.4e-104 382.5 221 84.6
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 4.0e-104 381.7 222 81.5
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 5.2e-104 381.3 225 81.8
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.2e-104 381.3 233 79.8
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.2e-104 381.3 225 81.8
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 8.9e-104 380.6 225 82.2
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 8.9e-104 380.6 226 81.0
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 1.2e-103 380.2 225 81.3
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.2e-103 380.2 224 80.4
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.2e-103 380.2 224 80.4
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 1.2e-103 380.2 225 81.3
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 1.2e-103 380.2 225 80.4
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 1.5e-103 379.8 225 82.7
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 2.0e-103 379.4 224 81.2
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 2.0e-103 379.4 224 79.9
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 2.0e-103 379.4 225 81.3
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 2.6e-103 379.0 222 81.1
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 3.4e-103 378.6 240 77.5
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 5.8e-103 377.9 222 81.5
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 5.8e-103 377.9 225 81.3
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 5.8e-103 377.9 235 77.9
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 5.8e-103 377.9 225 79.1
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 5.8e-103 377.9 225 79.6
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 7.6e-103 377.5 226 79.6
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 7.6e-103 377.5 226 79.6
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 9.9e-103 377.1 235 77.4
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 1.7e-102 376.3 226 79.6
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.7e-102 376.3 226 79.6
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 2.2e-102 375.9 222 81.5
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.9e-102 375.6 225 80.9
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 4.9e-102 374.8 226 79.2
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 4.9e-102 374.8 226 78.8
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 4.9e-102 374.8 225 80.9
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 8.4e-102 374.0 225 79.1
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 1.4e-101 373.2 225 80.9
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 1.4e-101 373.2 225 80.9
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 4.2e-101 371.7 225 80.0
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 9.3e-101 370.5 225 80.0
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 1.2e-100 370.2 237 78.1
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 2.7e-100 369.0 228 79.4
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 3.5e-100 368.6 224 79.5
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 3.5e-100 368.6 225 79.6
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 6.0e-100 367.9 221 78.7
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 1.0e-99 367.1 224 78.6
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.3e-99 366.7 230 77.4
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 1.7e-99 366.3 236 77.1
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 1.7e-99 366.3 225 79.6
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 2.3e-99 365.9 224 78.6
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 3.0e-99 365.5 226 77.9
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 3.9e-99 365.2 235 74.9
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 3.9e-99 365.2 226 78.3
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 5.1e-99 364.8 236 73.7
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 5.1e-99 364.8 226 82.3
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 8.7e-99 364.0 240 74.6
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.5e-98 363.2 220 78.6
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 2.5e-98 362.5 234 73.9
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 3.3e-98 362.1 226 79.2
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 4.3e-98 361.7 225 77.8
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 5.6e-98 361.3 226 78.8
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 2.1e-97 359.4 218 78.4
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 3.1e-96 355.5 226 74.8
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 3.1e-96 355.5 226 74.8
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 3.1e-96 355.5 226 75.7
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 6.9e-96 354.4 226 76.1
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 6.9e-96 354.4 226 73.0
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 9.0e-96 354.0 214 79.4
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 2.0e-95 352.8 226 76.1
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 2.0e-95 352.8 227 74.9
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 2.0e-95 352.8 226 74.8
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 4.4e-95 351.7 227 74.4
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 4.4e-95 351.7 226 75.7
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 5.8e-95 351.3 227 74.9
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 5.8e-95 351.3 225 77.3
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 7.6e-95 350.9 226 74.8
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 7.6e-95 350.9 225 75.6
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.7e-94 349.7 226 73.0
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 1.7e-94 349.7 226 75.2
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 1.7e-94 349.7 222 74.3
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 1.4e-93 346.7 228 75.0
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.9e-93 346.3 226 75.2
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 2.4e-93 345.9 225 73.3
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 3.2e-93 345.5 226 72.6
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 4.2e-93 345.1 224 75.9
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 9.3e-93 344.0 224 75.9
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.6e-92 343.2 218 75.7
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 2.7e-92 342.4 218 75.7
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 1.7e-91 339.7 226 73.5
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 3.3e-90 335.5 322 56.8
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 5.6e-90 334.7 223 70.9
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 5.6e-90 334.7 225 70.2
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 7.4e-90 334.3 304 57.9
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 1.3e-89 333.6 252 65.9
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 1.6e-89 333.2 224 74.1
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 4.0e-88 328.6 225 71.1
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 5.8e-87 324.7 222 67.6
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 9.9e-87 323.9 187 82.9
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.2e-85 318.9 218 73.9
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 9.3e-85 317.4 225 65.8
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 6.0e-84 314.7 225 64.9
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 1.9e-82 309.7 226 67.3
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 3.3e-82 308.9 230 68.7
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.3e-81 307.0 226 66.8
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 4.8e-81 305.1 192 75.5
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 1.5e-79 300.1 198 74.2
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 5.8e-79 298.1 187 74.3
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 8.4e-78 294.3 225 59.6
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 7.4e-74 281.2 185 73.0
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 2.7e-68 262.7 168 75.6
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.1e-66 257.3 197 64.5
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 7.4e-66 254.6 237 57.8
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 3.1e-64 249.2 163 74.8
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 1.0e-54 217.6 155 65.2
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 1.9e-53 213.4 218 50.0
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 4.4e-42 175.6 119 68.9
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 2.1e-36 156.8 101 73.3
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 2.8e-33 146.4 189 38.1
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 1.8e-27 127.1 96 69.8
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 2.0e-26 123.6 209 34.9
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 4.9e-09 65.9 45 62.2


User provided reference genes

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