Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 4.0e-161 571.6 340 100.0
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 3.3e-123 445.7 325 72.9
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 3.3e-123 445.7 335 71.9
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 5.6e-123 444.9 335 71.6
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 8.9e-121 437.6 331 77.6
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 6.4e-119 431.4 327 77.1
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.9e-118 429.9 328 69.8
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 2.7e-117 426.0 331 75.2
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 2.7e-117 426.0 331 75.5
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.2e-114 417.2 332 75.0
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 4.7e-114 415.2 332 66.9
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 6.8e-113 411.4 331 65.9
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 2.0e-112 409.8 338 70.7
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 2.6e-112 409.5 331 66.5
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 5.8e-112 408.3 332 68.4
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.3e-111 407.1 332 73.8
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 2.2e-111 406.4 330 73.3
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 2.4e-110 402.9 332 72.3
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.2e-110 402.5 346 66.2
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 5.4e-110 401.7 323 74.9
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.3e-108 397.1 332 63.9
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 1.7e-108 396.7 338 68.3
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.3e-108 396.4 337 71.5
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 8.7e-108 394.4 336 70.2
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.1e-107 394.0 333 63.4
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 1.1e-107 394.0 334 68.6
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 1.9e-107 393.3 333 68.2
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 2.5e-107 392.9 332 63.6
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 3.3e-107 392.5 332 64.8
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 3.3e-107 392.5 333 67.6
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 3.3e-107 392.5 333 63.7
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 5.6e-107 391.7 332 70.5
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 7.3e-107 391.3 332 70.2
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 7.3e-107 391.3 333 64.6
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 9.6e-107 391.0 333 64.6
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 2.1e-106 389.8 331 71.3
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.8e-106 389.4 332 62.7
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 3.6e-106 389.0 333 62.5
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 8.1e-106 387.9 333 63.7
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.8e-105 386.7 331 64.0
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 5.3e-105 385.2 332 71.1
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 6.9e-105 384.8 345 69.6
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 6.9e-105 384.8 333 70.0
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 2.0e-104 383.3 340 64.7
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.0e-104 383.3 332 70.5
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 2.0e-104 383.3 334 63.2
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 4.4e-104 382.1 338 69.8
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 4.4e-104 382.1 333 62.8
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 9.9e-104 380.9 331 62.2
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 3.8e-103 379.0 332 70.5
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 6.4e-103 378.3 331 60.1
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 6.4e-103 378.3 332 61.7
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 8.4e-103 377.9 328 64.0
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 8.4e-103 377.9 328 63.7
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 1.1e-102 377.5 332 60.5
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 1.9e-102 376.7 327 63.0
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 9.3e-102 374.4 358 59.5
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 9.3e-102 374.4 312 66.3
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 2.1e-101 373.2 328 63.4
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.1e-101 373.2 328 63.4
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.1e-101 373.2 328 63.4
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 2.7e-101 372.9 333 67.9
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 6.0e-101 371.7 328 69.8
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 6.0e-101 371.7 333 62.5
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 7.9e-101 371.3 326 67.8
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.7e-100 370.2 333 67.6
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.0e-100 369.4 330 61.8
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.5e-99 367.1 344 60.8
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 2.1e-98 363.2 307 72.0
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 3.6e-98 362.5 332 59.0
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 6.2e-98 361.7 315 63.5
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.4e-97 360.5 332 68.4
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.4e-97 360.5 333 60.1
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.8e-97 360.1 331 58.6
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 1.8e-97 360.1 293 70.6
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.5e-96 357.1 332 63.3
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 2.9e-95 352.8 337 56.4
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 2.9e-95 352.8 412 51.2
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 2.9e-95 352.8 293 66.6
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 6.4e-95 351.7 330 59.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.1e-94 350.9 306 70.6
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.1e-94 350.9 301 63.1
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.1e-94 350.9 318 65.1
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.4e-94 350.5 332 58.1
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 1.4e-94 350.5 332 58.1
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.9e-94 350.1 260 71.2
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 2.4e-94 349.7 332 58.4
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 4.2e-94 349.0 370 56.8
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 4.2e-94 349.0 331 60.4
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 5.4e-94 348.6 355 65.4
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 5.4e-94 348.6 332 57.8
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 7.1e-94 348.2 326 60.4
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.6e-93 347.1 332 58.1
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.3e-91 339.3 400 53.2
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.8e-90 336.3 413 53.8
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 3.1e-89 332.8 301 71.1
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 2.5e-86 323.2 359 57.9
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 7.1e-86 321.6 332 63.6
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 9.3e-86 321.2 334 53.9
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 2.7e-85 319.7 326 63.8
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 2.7e-85 319.7 297 59.9
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.3e-84 317.4 283 71.0
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.1e-83 314.3 296 59.1
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 3.7e-82 309.3 232 77.2
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 6.2e-82 308.5 371 57.7
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 3.1e-81 306.2 267 68.5
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 7.6e-80 301.6 234 67.9
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.8e-76 290.4 332 54.8
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.1e-75 287.7 215 70.7
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 2.8e-74 283.1 246 75.2
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.2e-72 277.7 336 46.1
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 7.9e-69 265.0 426 41.1
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 2.9e-63 246.5 235 60.4
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 7.2e-62 241.9 259 57.1
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.8e-60 237.3 240 58.3
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 5.7e-59 232.3 223 57.8
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.3e-58 231.1 192 64.1
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 1.7e-58 230.7 302 50.0
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 2.4e-57 226.9 248 52.0
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.5e-56 224.2 209 59.8
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.5e-55 218.4 129 88.4
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 1.5e-51 207.6 185 67.0
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 1.5e-51 207.6 324 39.8
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.5e-51 207.6 330 40.0
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.0e-47 194.9 137 73.0
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 5.0e-47 192.6 333 37.5
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 6.5e-39 165.6 169 60.9
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 4.7e-37 159.5 134 62.7
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 9.1e-33 145.2 161 62.7
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 9.1e-33 145.2 137 57.7
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 3.3e-30 136.7 196 44.9
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.3e-23 114.8 118 73.7
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 1.3e-23 114.8 314 29.9
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 1.4e-20 104.8 76 69.7
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 7.5e-19 99.0 105 54.3
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.9e-18 97.1 102 55.9
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 6.0e-16 89.4 100 74.0
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.5e-14 84.7 223 30.5
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.1e-13 80.9 86 48.8
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.5e-11 74.7 50 72.0
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 2.0e-11 74.3 53 71.7
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 4.4e-11 73.2 41 90.2
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 5.4e-09 66.2 57 49.1
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 2.3e-07 60.8 56 48.2
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.1e-06 58.5 36 75.0


User provided reference genes

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