Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1760.3 860 100.0
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1731.1 860 98.3
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1669.4 860 95.1
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1558.9 864 88.3
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1553.5 863 88.2
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1524.2 823 90.3
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1512.3 858 86.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1320.4 866 73.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1310.4 866 71.0
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1308.1 866 71.4
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1306.6 859 72.8
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1301.2 858 71.9
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1297.7 870 72.0
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1295.8 864 71.3
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1293.9 870 72.0
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1290.8 862 71.2
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1288.1 862 71.1
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1285.0 858 71.6
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1283.9 870 72.0
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1283.9 861 71.0
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1281.5 867 71.5
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1274.6 877 70.2
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1270.8 863 70.0
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 862 71.0
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 862 70.8
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1268.4 861 70.8
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1266.5 862 70.6
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 860 70.6
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 868 70.0
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1263.4 868 69.6
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1261.5 864 70.6
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1259.6 869 70.2
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 862 69.6
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 864 69.6
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1257.7 863 70.0
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1257.3 865 69.8
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 868 69.4
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1253.0 860 69.7
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 871 69.3
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1246.1 864 69.6
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 868 68.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 859 69.2
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1240.3 862 69.3
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1238.0 866 68.8
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1236.9 872 68.2
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1236.1 877 67.6
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1235.7 860 69.1
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 871 67.5
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1230.7 864 69.2
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1228.4 860 68.3
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 866 68.1
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1225.7 864 67.2
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1225.3 862 68.4
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1225.3 865 67.6
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 864 68.1
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 860 68.0
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 866 68.7
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 870 67.9
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 865 67.1
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1219.5 865 68.9
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 872 66.6
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 864 68.4
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 865 66.8
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 866 68.6
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 870 66.9
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1211.1 865 67.6
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1208.0 886 66.7
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 878 67.3
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1207.2 882 66.0
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1200.7 862 67.7
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1200.3 858 66.8
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1199.9 861 67.0
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1197.2 861 67.4
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1196.8 862 66.8
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1194.5 868 66.6
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 864 67.0
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1191.4 864 67.0
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1190.3 864 66.9
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1190.3 862 66.7
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1186.0 865 66.8
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1184.1 864 66.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1184.1 864 66.8
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1174.8 863 66.0
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1174.8 860 65.3
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1172.9 864 65.9
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1171.4 860 65.2
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1171.4 864 66.1
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1162.5 862 66.1
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1144.0 865 64.0
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1091.3 852 63.7
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.5e-310 1069.3 859 61.7
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.0e-306 1056.6 859 59.4
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 1.1e-305 1053.1 745 69.7
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.1e-303 1046.6 646 75.5
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 4.2e-300 1034.6 691 70.6
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.6e-291 1006.1 855 59.5
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 2.0e-286 989.2 861 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.3e-282 976.5 866 55.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 2.3e-282 975.7 692 67.3
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 5.0e-277 958.0 867 54.2
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 6.5e-277 957.6 852 55.0
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 3.0e-205 719.5 760 47.8
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 4.6e-166 589.3 388 71.1
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 3.1e-154 550.1 472 58.5
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 4.8e-147 526.2 459 57.5
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 5.5e-135 486.1 304 82.6
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.5e-119 434.1 357 60.8
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 1.5e-84 318.5 204 78.9
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 4.2e-66 257.3 168 70.2
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 4.8e-54 217.2 198 59.1
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.0e-51 209.5 159 64.8
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 7.2e-50 203.4 172 59.9
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 8.2e-38 163.3 216 43.5
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 4.7e-33 147.5 149 48.3
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.8e-29 135.6 85 70.6
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.6e-28 132.5 118 60.2
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.6e-23 115.2 76 71.1
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 2.2e-22 112.1 90 61.1
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 9.1e-21 106.7 87 63.2
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.6e-20 105.9 73 67.1
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 5.9e-20 104.0 106 50.9
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 6.3e-14 84.0 330 23.9
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.1e-13 83.2 273 24.5
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 4.1e-13 81.3 385 25.2
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.2e-12 79.7 311 25.4
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.7e-11 75.9 240 25.4
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.9e-11 75.1 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.9e-10 72.4 329 22.5
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 9.5e-10 70.1 310 23.2
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.2e-09 69.7 299 23.7
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 4.0e-08 64.7 93 43.0
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.2e-07 63.2 82 48.8
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.5e-07 62.8 299 23.4
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.0e-07 62.4 322 21.4
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.8e-07 60.1 33 75.8
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 9.8e-07 60.1 336 21.4
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.3e-06 59.7 298 23.2
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.7e-06 59.3 221 24.4
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 2.8e-06 58.5 290 24.1
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 3.7e-06 58.2 202 26.7
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 8.3e-06 57.0 284 24.3


User provided reference genes

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