Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.8e-107 392.5 185 100.0
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 8.9e-107 390.2 185 99.5
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.9e-101 372.5 185 95.7
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.0e-94 350.1 185 88.6
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 5.6e-93 344.4 187 86.6
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 7.6e-90 334.0 207 78.7
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.7e-89 332.8 179 85.5
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 6.0e-87 324.3 179 82.7
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 6.0e-87 324.3 179 82.7
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 6.0e-87 324.3 179 83.2
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 8.6e-86 320.5 183 81.4
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 8.6e-86 320.5 183 81.4
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 4.3e-85 318.2 177 82.5
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 9.6e-85 317.0 179 79.3
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 9.6e-85 317.0 179 79.9
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.2e-84 316.6 179 81.0
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 2.1e-84 315.8 178 80.9
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 2.8e-84 315.5 179 78.2
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 4.7e-84 314.7 180 80.0
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 4.7e-84 314.7 177 82.5
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.7e-84 314.7 178 79.8
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 8.1e-84 313.9 175 81.1
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.1e-83 313.5 177 81.9
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 1.1e-83 313.5 177 81.9
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.1e-83 313.5 179 79.3
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.1e-83 313.5 185 78.9
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 1.4e-83 313.2 179 79.3
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 1.4e-83 313.2 179 79.3
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 1.8e-83 312.8 175 81.1
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 1.8e-83 312.8 180 79.4
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.4e-83 312.4 183 78.1
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.1e-83 312.0 178 79.2
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.1e-83 312.0 178 79.8
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 3.1e-83 312.0 173 82.1
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 4.0e-83 311.6 183 78.1
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 4.0e-83 311.6 179 82.1
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 4.0e-83 311.6 178 79.2
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 5.2e-83 311.2 175 80.6
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 6.9e-83 310.8 181 78.5
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 8.9e-83 310.5 175 77.1
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 8.9e-83 310.5 175 80.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 8.9e-83 310.5 175 80.0
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.2e-82 310.1 194 74.7
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-82 310.1 178 78.7
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.5e-82 309.7 179 78.8
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.0e-82 309.3 178 78.7
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 2.6e-82 308.9 180 77.8
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 2.6e-82 308.9 178 78.1
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.6e-82 308.9 176 78.4
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 3.4e-82 308.5 181 77.9
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 3.4e-82 308.5 177 79.1
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 3.4e-82 308.5 183 74.9
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 4.4e-82 308.1 173 78.6
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 5.8e-82 307.8 175 78.9
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 7.6e-82 307.4 179 78.2
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 7.6e-82 307.4 194 75.3
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 7.6e-82 307.4 178 79.2
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 7.6e-82 307.4 175 78.9
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 9.9e-82 307.0 187 73.8
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 9.9e-82 307.0 177 80.2
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 1.3e-81 306.6 183 75.4
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 1.3e-81 306.6 179 75.4
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.2e-81 305.8 184 76.6
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 2.9e-81 305.4 175 78.3
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.9e-81 305.4 175 78.3
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 3.8e-81 305.1 183 74.9
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.9e-81 304.7 180 77.8
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.9e-81 304.7 180 77.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 8.4e-81 303.9 175 77.7
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 8.4e-81 303.9 175 77.7
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 8.4e-81 303.9 176 77.8
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 8.4e-81 303.9 177 79.1
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 1.1e-80 303.5 178 75.8
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.9e-80 302.8 181 76.8
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.2e-80 302.0 178 75.8
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 5.4e-80 301.2 180 76.7
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 5.4e-80 301.2 187 73.3
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 7.1e-80 300.8 183 73.8
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 9.3e-80 300.4 183 76.5
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 3.5e-79 298.5 211 68.7
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 7.8e-79 297.4 177 76.8
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.0e-78 297.0 184 75.0
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.3e-78 295.8 165 82.4
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.1e-77 293.5 175 73.7
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 1.9e-77 292.7 183 74.3
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 1.3e-76 290.0 179 73.7
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.3e-76 290.0 179 73.7
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.3e-76 290.0 175 73.1
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.3e-76 290.0 175 73.1
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.3e-76 290.0 178 72.5
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.1e-76 287.3 161 81.4
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.8e-75 286.2 188 71.8
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 5.3e-75 284.6 159 81.8
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.2e-74 283.5 157 83.4
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.4e-74 282.0 177 74.0
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 5.8e-74 281.2 153 83.0
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 9.9e-74 280.4 176 73.3
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 9.9e-74 280.4 176 73.3
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.7e-73 279.6 196 65.3
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.4e-72 275.8 177 71.8
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 2.4e-72 275.8 162 77.8
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 3.2e-72 275.4 154 81.8
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.3e-70 270.0 154 83.1
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.8e-70 269.6 217 59.0
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.3e-70 269.2 217 58.5
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 6.7e-70 267.7 184 67.4
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 1.5e-69 266.5 186 71.5
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.9e-69 266.2 168 75.0
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.3e-68 263.5 276 52.9
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.4e-67 260.0 153 77.1
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 3.1e-67 258.8 175 67.4
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 4.0e-67 258.5 148 77.7
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.7e-65 253.1 200 61.0
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 4.9e-65 251.5 183 65.6
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 9.3e-64 247.3 183 66.1
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 2.7e-63 245.7 149 72.5
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 8.7e-62 240.7 185 62.7
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 2.5e-61 239.2 145 71.7
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.2e-58 230.3 137 73.0
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 1.7e-57 226.5 180 55.6
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 1.4e-56 223.4 179 57.5
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.5e-55 218.8 117 83.8
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 8.7e-54 214.2 186 61.8
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.3e-52 210.3 140 66.4
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.4e-51 206.1 176 58.0
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 5.3e-51 204.9 194 61.3
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 7.2e-48 194.5 200 51.0
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.2e-47 193.7 93 94.6
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 3.0e-46 189.1 191 47.1
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.8e-44 181.8 171 45.0
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.8e-44 181.8 171 45.0
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 4.1e-43 178.7 209 39.2
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.5e-41 171.4 87 87.4
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 2.5e-40 169.5 119 63.9
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.2e-40 168.7 140 57.9
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 9.4e-40 167.5 171 43.3
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.3e-36 157.1 181 38.7
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.7e-36 155.6 146 56.2
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 8.2e-36 154.5 160 48.1
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.9e-32 143.3 141 44.7
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 5.5e-32 141.7 93 66.7
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 5.0e-25 118.6 87 60.9
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 2.7e-10 69.7 70 48.6
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 6.5e-09 65.1 43 65.1


User provided reference genes

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