Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 0.0e+00 1503.0 770 100.0
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 0.0e+00 1456.8 770 97.1
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 0.0e+00 1271.1 770 85.7
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 0.0e+00 1145.2 707 84.6
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 0.0e+00 1118.2 780 75.5
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 0.0e+00 1110.5 767 75.6
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 3.0e-281 971.8 763 69.2
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 1.4e-267 926.4 638 77.4
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 2.2e-114 417.5 252 86.1
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 2.6e-112 410.6 792 38.5
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 2.9e-111 407.1 832 34.9
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 3.0e-100 370.5 825 35.0
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.1e-97 362.1 805 33.8
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.8e-97 361.3 802 34.5
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.2e-96 358.6 830 33.5
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.3e-95 355.1 813 33.8
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.1e-94 352.1 798 33.3
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.2e-91 342.0 805 33.3
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.2e-91 342.0 817 32.8
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.5e-91 341.7 805 32.2
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.6e-91 340.9 842 32.3
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 1.7e-90 338.2 806 34.0
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 2.9e-87 327.4 847 31.4
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 3.8e-87 327.0 804 32.8
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 6.6e-87 326.2 716 33.9
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 4.3e-86 323.6 789 30.4
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 7.3e-86 322.8 912 30.7
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.4e-84 318.5 824 32.2
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 4.4e-83 313.5 801 32.2
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 7.5e-83 312.8 809 32.1
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 2.9e-82 310.8 774 32.3
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 3.7e-82 310.5 795 31.6
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 6.4e-82 309.7 786 30.9
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.8e-81 308.1 810 30.4
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 2.4e-81 307.8 799 30.8
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 1.3e-79 302.0 834 32.4
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 3.9e-79 300.4 779 30.8
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 6.6e-79 299.7 571 36.4
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 4.3e-78 297.0 704 32.2
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.0e-76 292.4 783 33.2
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.0e-76 290.4 809 30.7
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 1.2e-75 288.9 813 31.6
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 2.6e-75 287.7 782 30.9
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 3.4e-75 287.3 800 31.0
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.2e-74 284.6 800 30.9
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.9e-74 284.3 741 32.5
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 3.7e-74 283.9 761 31.3
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 3.7e-74 283.9 768 31.0
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 6.4e-74 283.1 790 30.4
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.6e-72 278.5 806 30.6
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.0e-72 278.1 785 30.4
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.0e-72 276.6 798 30.2
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.0e-71 275.8 806 30.8
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 8.6e-71 272.7 783 30.4
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.1e-70 272.3 783 30.4
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 4.3e-70 270.4 786 30.3
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 7.3e-70 269.6 789 30.4
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.2e-69 268.9 809 31.0
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 2.1e-69 268.1 796 30.5
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 4.7e-69 266.9 680 31.6
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.2e-69 266.5 783 30.3
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 2.3e-68 264.6 675 31.0
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 2.3e-68 264.6 664 32.4
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 9.8e-67 259.2 745 30.9
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 4.1e-65 253.8 780 29.0
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.3e-63 248.8 812 31.4
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.1e-62 245.7 782 29.3
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 8.1e-61 239.6 802 28.9
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 1.4e-60 238.8 823 28.1
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 5.8e-59 233.4 782 28.5
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 9.9e-59 232.6 791 29.3
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 5.4e-57 226.9 668 27.5
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 2.7e-56 224.6 814 27.0
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.3e-55 222.2 689 28.9
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 3.0e-55 221.1 834 27.8
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.9e-54 218.4 655 28.4
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.9e-54 218.4 778 26.0
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 9.6e-54 216.1 777 27.0
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.6e-53 215.3 715 26.7
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.6e-53 214.2 785 26.5
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 4.7e-53 213.8 777 26.6
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 8.1e-53 213.0 780 27.1
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 8.1e-53 213.0 481 31.6
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 8.1e-53 213.0 549 31.1
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 6.9e-52 209.9 647 27.0
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 2.0e-51 208.4 699 27.8
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 4.4e-51 207.2 783 26.7
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 2.4e-49 201.4 777 26.3
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 4.2e-49 200.7 774 25.6
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 9.3e-49 199.5 776 26.2
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 2.3e-47 194.9 649 27.3
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.9e-46 191.8 773 26.0
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 9.6e-46 189.5 781 26.1
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 3.1e-44 184.5 650 26.5
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 1.5e-43 182.2 503 27.8
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 1.7e-42 178.7 651 26.6
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.7e-42 178.7 652 27.5
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 2.9e-42 177.9 650 26.8
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 3.8e-42 177.6 741 25.4
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 8.4e-42 176.4 650 26.9
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.2e-41 174.5 407 31.4
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.2e-41 174.1 407 31.4
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.2e-41 174.1 407 31.4
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.0e-39 169.5 737 25.1
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.8e-39 168.7 651 26.3
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.8e-39 168.7 651 26.3
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.7e-39 166.8 618 27.5
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 2.2e-34 151.8 228 40.4
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.4e-33 148.3 599 26.5
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.2e-32 146.0 360 30.8
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 3.5e-32 144.4 728 23.9
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 7.9e-32 143.3 498 29.1
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 2.8e-29 134.8 764 24.0
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.8e-23 115.5 139 46.0
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 6.7e-23 113.6 489 24.1
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 1.1e-22 112.8 284 29.6
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 4.8e-21 107.5 282 29.4
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.2e-19 102.8 414 28.0
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.3e-18 99.4 314 28.7
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 2.2e-18 98.6 377 26.3
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 5.0e-18 97.4 311 28.6
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.2e-16 92.8 311 28.6
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 2.3e-15 88.6 123 42.3
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 7.4e-14 83.6 112 37.5
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.5e-10 70.1 290 27.2
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.4e-07 62.8 105 34.3
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 5.7e-06 57.4 166 30.7


User provided reference genes

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