Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.4e-297 1024.2 515 100.0
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 2.7e-294 1014.6 515 99.0
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.6e-254 882.5 530 86.6
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.3e-237 825.5 585 75.4
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.5e-212 743.0 561 73.4
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 1.4e-205 719.9 426 80.5
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.0e-205 718.4 433 80.8
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 2.6e-204 715.7 473 75.1
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 7.5e-204 714.1 506 71.1
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 9.8e-204 713.8 475 75.4
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.7e-203 713.0 465 75.9
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 2.8e-203 712.2 425 80.5
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.8e-203 712.2 532 68.8
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.1e-202 710.3 548 65.3
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 5.4e-202 708.0 503 70.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 3.5e-201 705.3 515 69.7
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 4.5e-201 704.9 533 68.5
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.3e-200 703.4 540 66.7
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.3e-200 702.6 527 67.7
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 2.3e-200 702.6 519 68.2
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 2.9e-200 702.2 525 68.0
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 3.8e-200 701.8 451 75.8
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.1e-199 700.3 525 68.0
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 2.5e-199 699.1 515 68.9
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 3.3e-199 698.7 500 69.2
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 3.3e-199 698.7 518 68.1
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 7.2e-199 697.6 533 66.2
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 9.5e-199 697.2 456 75.2
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 2.1e-198 696.0 504 70.4
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 8.0e-198 694.1 504 70.6
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 8.0e-198 694.1 506 67.4
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 8.0e-198 694.1 492 70.7
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.0e-197 693.7 515 68.2
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.0e-197 693.7 515 68.2
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.4e-197 693.3 477 72.1
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.0e-197 692.2 443 75.8
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 3.0e-197 692.2 491 70.1
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 4.0e-197 691.8 517 67.3
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 1.5e-196 689.9 489 69.5
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.5e-196 689.9 425 77.6
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 2.0e-196 689.5 459 74.3
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 2.0e-196 689.5 424 78.1
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.0e-196 689.5 516 68.6
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 2.6e-196 689.1 501 68.9
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.7e-196 688.0 497 69.6
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 9.8e-196 687.2 512 68.0
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 9.8e-196 687.2 500 69.8
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 2.8e-195 685.6 452 73.2
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 3.7e-195 685.3 513 66.3
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 6.3e-195 684.5 430 77.2
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 4.1e-194 681.8 521 66.6
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.7e-193 679.1 522 66.3
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.5e-193 678.7 466 71.0
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 4.5e-193 678.3 519 66.5
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 5.9e-193 677.9 524 66.2
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 5.9e-193 677.9 479 71.2
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.0e-192 677.2 525 67.4
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.0e-192 677.2 423 77.3
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.3e-192 676.8 462 73.8
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.3e-192 676.8 503 69.2
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.3e-192 676.8 503 69.2
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.7e-192 676.4 496 69.8
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.7e-192 676.4 496 69.8
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.9e-192 675.6 496 69.8
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 2.9e-192 675.6 501 68.3
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 2.9e-192 675.6 517 66.7
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 5.0e-192 674.9 449 73.1
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 5.0e-192 674.9 498 67.5
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 2.5e-191 672.5 457 70.9
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 7.3e-191 671.0 499 69.3
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.2e-190 670.2 418 76.8
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.2e-190 670.2 514 66.7
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.2e-190 670.2 514 66.7
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 2.1e-190 669.5 523 65.8
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 2.1e-190 669.5 423 75.9
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 2.1e-190 669.5 522 65.1
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.8e-190 669.1 514 66.9
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 4.7e-190 668.3 514 66.3
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 4.7e-190 668.3 514 66.3
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.0e-189 667.2 517 66.3
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.0e-189 667.2 533 64.7
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.8e-189 666.4 514 66.7
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.8e-189 666.4 433 78.3
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 3.1e-189 665.6 445 73.0
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 3.1e-189 665.6 499 67.9
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 5.2e-189 664.8 465 69.7
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 2.6e-188 662.5 514 65.2
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 3.4e-188 662.1 438 72.6
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 5.8e-188 661.4 479 69.1
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 5.8e-188 661.4 460 71.3
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 7.5e-188 661.0 448 73.0
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.1e-186 657.1 520 66.7
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.4e-186 656.8 512 65.4
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.2e-186 655.6 418 74.6
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 3.2e-186 655.6 492 68.9
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 3.2e-186 655.6 502 66.7
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-185 653.7 520 66.3
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 7.8e-185 651.0 448 70.3
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.8e-185 651.0 520 65.8
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.6e-182 642.1 520 66.2
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.7e-182 641.7 421 73.4
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.8e-181 639.8 528 63.8
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 5.2e-181 638.3 562 60.3
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 7.0e-178 627.9 368 80.7
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 9.2e-178 627.5 419 74.9
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.2e-177 627.1 578 59.5
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.7e-176 623.2 440 71.8
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.1e-175 620.5 419 70.9
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 2.1e-174 616.3 501 64.9
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.1e-173 614.0 545 62.6
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 4.1e-170 602.1 455 67.5
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 4.1e-170 602.1 460 65.4
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.8e-169 597.8 416 75.0
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.7e-168 596.7 592 57.1
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.3e-168 596.3 530 61.7
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 1.4e-165 587.0 454 70.9
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 2.6e-164 582.8 475 58.9
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.9e-162 576.6 441 63.7
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 7.1e-162 574.7 417 66.7
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.7e-161 572.8 554 58.7
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 8.7e-160 567.8 374 73.8
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 1.5e-159 567.0 512 60.0
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 1.9e-159 566.6 498 62.2
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.2e-158 563.9 617 53.5
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.6e-158 563.5 455 62.2
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.5e-156 557.0 529 59.4
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.2e-155 553.1 428 65.2
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.4e-155 551.6 467 58.0
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 6.4e-155 551.6 458 62.9
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.7e-153 546.2 479 61.2
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.1e-150 536.6 458 62.2
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.6e-148 529.6 364 69.0
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.4e-148 529.3 416 67.1
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.1e-143 514.2 454 61.2
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 7.4e-143 511.5 418 62.4
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 6.2e-142 508.4 354 70.6
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 8.1e-142 508.1 373 69.2
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.4e-138 497.3 403 65.3
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.9e-138 496.9 541 53.4
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 7.1e-138 495.0 298 90.6
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 1.6e-137 493.8 347 72.0
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 3.5e-137 492.7 328 74.7
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.9e-137 491.5 352 70.7
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 8.2e-134 481.5 363 69.1
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.3e-128 463.4 455 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.5e-119 434.1 336 62.8
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 1.4e-117 427.6 377 61.3
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 6.5e-115 418.7 276 74.6
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.5e-111 407.5 316 66.1
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.1e-101 374.8 210 82.9
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.3e-94 351.3 434 45.4
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.0e-75 288.5 281 58.7
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 6.1e-73 279.3 150 84.0
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.3e-67 260.8 193 61.7
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 8.6e-67 258.8 261 55.9
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.8e-65 253.8 238 60.1
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 5.2e-64 249.6 155 78.1
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.7e-59 234.6 390 35.9
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-59 234.2 453 37.5
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 4.3e-58 229.9 160 61.2
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.4e-55 220.3 106 99.1
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.5e-50 204.9 519 31.8
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.3e-43 181.8 145 64.8
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 6.5e-22 109.8 195 34.4
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.8e-19 101.7 49 91.8
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.3e-18 97.4 286 28.7
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 3.1e-16 90.9 53 71.7
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 1.5e-15 88.6 51 74.5
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 2.2e-14 84.7 123 45.5
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 1.5e-10 72.0 106 43.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 5.7e-10 70.1 63 52.4
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.7e-09 67.4 39 76.9
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.2e-07 62.4 49 63.3
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 3.8e-06 57.4 49 61.2


User provided reference genes

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