Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 6.7e-102 374.0 188 100.0
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.3e-101 371.7 188 99.5
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.0e-94 350.1 188 93.6
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-93 346.7 189 93.1
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 4.8e-92 341.3 188 88.8
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.4e-91 339.0 194 86.6
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 6.9e-91 337.4 190 88.9
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 3.4e-90 335.1 190 87.9
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 4.5e-90 334.7 188 86.2
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 5.9e-90 334.3 190 88.4
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.9e-90 334.3 188 86.7
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.7e-90 334.0 188 88.8
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.7e-89 332.8 188 88.3
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.9e-89 332.0 188 88.3
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.9e-88 329.3 189 85.7
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 3.2e-88 328.6 194 84.0
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.2e-88 328.2 189 85.2
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.5e-88 327.8 189 85.2
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.2e-87 326.6 193 83.9
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 2.7e-87 325.5 189 85.2
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.9e-87 323.9 204 80.4
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.4e-86 323.2 195 85.1
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 5.2e-86 321.2 193 83.4
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 5.2e-86 321.2 191 83.2
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 6.7e-86 320.9 194 83.5
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 6.7e-86 320.9 193 82.4
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 8.8e-86 320.5 194 83.0
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.1e-85 320.1 193 82.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.6e-85 318.9 193 82.9
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 2.6e-85 318.9 192 83.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 3.3e-85 318.5 189 83.6
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 7.4e-85 317.4 191 81.2
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 7.4e-85 317.4 193 81.9
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 7.4e-85 317.4 194 82.5
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.3e-84 316.6 194 82.5
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.7e-84 316.2 193 81.3
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 2.2e-84 315.8 191 80.6
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.8e-84 315.5 194 81.4
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 3.7e-84 315.1 189 82.5
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 8.2e-84 313.9 191 81.2
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 8.2e-84 313.9 190 80.5
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 192 81.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.4e-83 313.2 193 82.4
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.4e-83 313.2 196 80.1
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.8e-83 312.8 190 80.5
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 2.4e-83 312.4 193 80.8
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.4e-83 312.4 198 78.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.1e-83 312.0 197 77.7
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.1e-83 312.0 197 79.7
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 5.3e-83 311.2 194 79.9
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.0e-83 310.8 192 80.7
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.1e-83 310.5 189 81.5
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-82 309.3 195 78.5
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 7.7e-82 307.4 192 77.6
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.3e-81 306.6 191 78.0
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.7e-81 306.2 212 74.1
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.7e-81 306.2 196 79.1
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.7e-81 306.2 198 76.8
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.2e-81 305.8 189 81.0
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.0e-81 304.7 194 77.8
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.0e-81 304.7 194 77.8
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 6.5e-81 304.3 198 75.8
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 6.5e-81 304.3 192 80.2
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 8.5e-81 303.9 194 77.3
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 8.5e-81 303.9 199 75.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.1e-80 303.5 194 77.3
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.5e-80 303.1 201 75.6
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 76.8
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.9e-80 302.8 201 73.6
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 2.5e-80 302.4 199 75.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 2.5e-80 302.4 199 75.9
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 3.2e-80 302.0 199 75.4
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 4.2e-80 301.6 199 75.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.2e-80 301.6 196 76.5
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 5.5e-80 301.2 200 75.0
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 5.5e-80 301.2 198 77.3
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.2e-80 300.8 200 75.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.2e-80 300.8 200 75.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 9.4e-80 300.4 199 75.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 9.4e-80 300.4 199 75.4
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 9.4e-80 300.4 197 75.1
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.6e-79 299.7 203 73.4
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.6e-79 299.7 203 71.9
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.7e-79 298.9 199 74.9
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.7e-79 298.9 199 73.9
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.7e-79 298.9 199 74.4
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 4.7e-79 298.1 199 74.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 4.7e-79 298.1 199 74.9
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 6.1e-79 297.7 194 75.8
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 8.0e-79 297.4 197 75.6
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 8.0e-79 297.4 197 75.6
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 8.0e-79 297.4 199 74.9
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.0e-79 297.4 202 74.8
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.8e-78 296.2 200 73.5
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.8e-78 296.2 237 65.4
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.3e-78 295.8 206 73.3
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.3e-78 295.8 201 75.1
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.3e-78 295.8 201 71.6
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 3.0e-78 295.4 204 71.6
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.2e-78 294.7 201 72.6
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.2e-77 293.5 198 75.3
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.5e-77 293.1 196 75.5
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.5e-77 293.1 202 73.3
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.0e-77 292.7 198 75.3
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 3.3e-77 292.0 194 76.8
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 4.4e-77 291.6 195 76.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 4.4e-77 291.6 194 76.8
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.7e-76 289.7 191 78.0
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 6.3e-76 287.7 198 75.3
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.4e-75 286.6 198 74.2
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 3.1e-75 285.4 198 72.2
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 3.1e-75 285.4 200 72.0
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 3.1e-75 285.4 192 74.5
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.1e-75 285.4 211 69.2
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 4.1e-75 285.0 200 72.0
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.2e-74 283.5 196 70.9
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.7e-73 279.6 171 78.9
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 5.0e-73 278.1 199 70.9
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 8.5e-73 277.3 174 79.3
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.9e-72 276.2 192 71.9
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.2e-72 275.4 186 73.7
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.6e-71 273.1 192 71.9
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.7e-71 272.3 223 64.1
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 3.6e-71 271.9 204 70.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 8.0e-71 270.8 210 68.6
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.0e-70 268.5 175 76.0
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.0e-70 268.5 187 72.2
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 5.2e-70 268.1 183 72.7
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.6e-69 265.8 201 68.2
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 5.7e-69 264.6 180 73.9
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 7.5e-69 264.2 197 66.5
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.3e-68 263.5 233 62.7
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 8.3e-68 260.8 181 70.2
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.8e-67 259.6 196 65.8
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 4.5e-66 255.0 187 72.7
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 7.7e-66 254.2 184 67.9
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 5.5e-64 248.1 213 62.0
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 5.2e-62 241.5 174 68.4
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.0e-61 239.6 198 59.1
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 7.5e-61 237.7 182 65.4
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.8e-60 235.7 188 65.4
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 3.7e-60 235.3 201 63.2
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 9.2e-59 230.7 177 66.1
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.6e-50 203.4 153 68.0
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.0e-49 198.4 122 82.0
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.0e-45 186.4 116 77.6
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.3e-44 183.7 99 97.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 3.2e-43 179.1 171 56.7
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 7.0e-43 177.9 100 91.0
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.9e-40 169.9 102 83.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 8.1e-39 164.5 97 81.4
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 7.5e-37 157.9 189 51.3
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.2e-29 134.0 191 47.1
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.4e-29 132.5 103 67.0
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.4e-29 132.1 70 92.9
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.7e-28 130.2 75 76.0
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 4.1e-27 125.6 72 77.8
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.6e-26 123.6 202 41.6
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.6e-26 123.6 192 39.6
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 3.9e-25 119.0 184 39.7
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.6e-21 106.3 99 59.6
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 2.2e-20 103.2 189 41.3
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 4.2e-19 99.0 71 74.6
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 4.6e-18 95.5 189 39.7
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 7.3e-16 88.2 78 53.8
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 4.8e-15 85.5 61 63.9
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 8.1e-15 84.7 161 34.2
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 9.0e-14 81.3 52 65.4
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.0e-13 80.1 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.4e-13 79.3 53 75.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 7.1e-11 71.6 55 61.8
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 6.7e-09 65.1 72 52.8


User provided reference genes

Program Settings