Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g017770 Solanum pennellii HOM05D000160 ORTHO05D011801 9.3e-71 270.0 128 100.0
Sopen07g018140 Solanum pennellii HOM05D000160 ORTHO05D011801 4.9e-64 247.7 127 92.1
Sopen07g018220 Solanum pennellii HOM05D000160 ORTHO05D011801 2.1e-54 215.7 114 86.8
PGSC0003DMG400044545 Solanum tuberosum HOM05D000160 ORTHO05D011801 1.2e-41 173.3 127 68.5
PGSC0003DMG400045998 Solanum tuberosum HOM05D000160 ORTHO05D000914 2.6e-33 145.6 137 54.0
PGSC0003DMG400022843 Solanum tuberosum HOM05D000160 ORTHO05D011801 4.5e-33 144.8 137 54.7
PGSC0003DMG400031282 Solanum tuberosum HOM05D000160 ORTHO05D000914 1.7e-32 142.9 137 52.6
PGSC0003DMG400042318 Solanum tuberosum HOM05D000160 ORTHO05D011801 2.1e-30 136.0 86 72.1
PGSC0003DMG400022844 Solanum tuberosum HOM05D000160 ORTHO05D000914 1.5e-28 129.8 142 47.9
PGSC0003DMG400025642 Solanum tuberosum HOM05D000160 ORTHO05D011801 4.1e-26 121.7 109 56.9
Sopen01g029730 Solanum pennellii HOM05D000160 ORTHO05D000914 2.9e-24 115.5 143 45.5
CAN.G185.1 Capsicum annuum HOM05D000160 ORTHO05D000914 3.8e-24 115.2 84 60.7
Peaxi162Scf01067g00026 Petunia axillaris HOM05D000160 ORTHO05D000914 1.1e-23 113.6 135 44.4
Solyc01g067780.1 Solanum lycopersicum HOM05D000160 ORTHO05D000914 3.2e-23 112.1 139 43.9
Nitab4.5_0001624g0010 Nicotiana tabacum HOM05D000160 ORTHO05D000914 3.0e-21 105.5 86 55.8
Nitab4.5_0000303g0010 Nicotiana tabacum HOM05D000160 ORTHO05D000914 1.5e-20 103.2 86 54.7
Nitab4.5_0006501g0040 Nicotiana tabacum HOM05D000160 ORTHO05D000914 1.5e-20 103.2 86 54.7
Nitab4.5_0001149g0020 Nicotiana tabacum HOM05D000160 ORTHO05D000914 1.3e-19 100.1 86 52.3
Lj6C667T12 Lonicera japonica HOM05D000160 ORTHO05D000914 9.1e-18 94.0 76 52.6
Solyc07g039220.1 Solanum lycopersicum HOM05D000160 ORTHO05D000914 2.6e-17 92.4 114 44.7
Dinv38334 Davidia involucrata HOM05D000160 ORTHO05D009988 1.3e-16 90.1 76 55.3
CSS0015092 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D000914 3.8e-16 88.6 143 38.5
Rhsim04G0215400 Rhododendron simsii HOM05D000160 ORTHO05D000914 5.0e-16 88.2 100 41.0
Cc03_g02490 Coffea canephora HOM05D000160 ORTHO05D000914 1.1e-15 87.0 76 51.3
Actinidia23439 Actinidia chinensis HOM05D000160 ORTHO05D000914 1.9e-15 86.3 81 46.9
Nitab4.5_0001867g0010 Nicotiana tabacum HOM05D000160 ORTHO05D011801 1.9e-15 86.3 78 48.7
vmacro08215 Vaccinium macrocarpon HOM05D000160 ORTHO05D000914 1.9e-15 86.3 100 40.0
QL06p006981 Quercus lobata HOM05D000160 ORTHO05D000914 5.5e-15 84.7 76 53.9
Rhsim02G0014200 Rhododendron simsii HOM05D001702 ORTHO05D001791 5.5e-15 84.7 128 39.1
PGSC0003DMG400046834 Solanum tuberosum HOM05D000160 ORTHO05D011801 5.5e-15 84.7 65 60.0
TAR365G0055 Trochodendron aralioides HOM05D000160 ORTHO05D000914 2.7e-14 82.4 82 47.6
Oeu028122.1 Olea europaea HOM05D000160 ORTHO05D011801 4.7e-14 81.6 82 47.6
Cfa015508 Carpinus fangiana HOM05D000160 ORTHO05D000914 6.1e-14 81.3 76 50.0
vmacro15270 Vaccinium macrocarpon HOM05D000160 ORTHO05D000914 6.1e-14 81.3 130 37.7
MELO3C021368.2 Cucumis melo HOM05D000160 ORTHO05D000914 1.4e-13 80.1 123 39.8
DCAR_030817 Daucus carota HOM05D000160 ORTHO05D011801 1.4e-13 80.1 81 44.4
CiPaw.01G154700 Carya illinoinensis HOM05D000160 ORTHO05D000914 1.8e-13 79.7 76 50.0
Haze_01043 Corylus avellana HOM05D000160 ORTHO05D000914 1.8e-13 79.7 76 51.3
DCAR_027117 Daucus carota HOM05D000160 ORTHO05D000914 2.3e-13 79.3 76 47.4
Atru.chr4.2740 Acer truncatum HOM05D000160 ORTHO05D000914 4.0e-13 78.6 74 48.6
Actinidia40219 Actinidia chinensis HOM05D000160 ORTHO05D000914 6.8e-13 77.8 74 47.3
PGSC0003DMG400043587 Solanum tuberosum HOM05D000160 ORTHO05D011801 6.8e-13 77.8 92 45.7
Hma1.2p1_0078F.1_g040875 Hydrangea macrophylla HOM05D000160 ORTHO05D000914 8.8e-13 77.4 81 45.7
Hma1.2p1_1671F.1_g296750 Hydrangea macrophylla HOM05D000160 ORTHO05D000914 8.8e-13 77.4 81 45.7
DCAR_015974 Daucus carota HOM05D000160 ORTHO05D011801 1.2e-12 77.0 76 46.1
Sabra10G0010200 Salix brachista HOM05D000160 ORTHO05D000914 1.5e-12 76.6 75 49.3
COL.COLO4_13944 Corchorus olitorius HOM05D000160 ORTHO05D000914 2.6e-12 75.9 135 34.1
DCAR_000790 Daucus carota HOM05D000160 ORTHO05D011801 2.6e-12 75.9 72 45.8
DCAR_027116 Daucus carota HOM05D000160 ORTHO05D000914 2.6e-12 75.9 131 33.6
AUR62044657 Chenopodium quinoa HOM05D000160 ORTHO05D000914 3.4e-12 75.5 80 43.8
Ciclev10004243m.g Citrus clementina HOM05D000160 ORTHO05D000914 3.4e-12 75.5 76 42.1
Gorai.005G056900 Gossypium raimondii HOM05D000160 ORTHO05D000914 3.4e-12 75.5 136 33.1
CSS0005936 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D000914 5.7e-12 74.7 76 44.7
Gohir.D02G051600 Gossypium hirsutum HOM05D000160 ORTHO05D000914 5.7e-12 74.7 146 31.5
Nn4g26061 Nelumbo nucifera HOM05D000160 ORTHO05D000914 5.7e-12 74.7 121 34.7
TAR362G0366 Trochodendron aralioides HOM05D000160 ORTHO05D000914 5.7e-12 74.7 105 40.0
Manes.03G190300 Manihot esculenta HOM05D000160 ORTHO05D000914 7.5e-12 74.3 83 44.6
AUR62024078 Chenopodium quinoa HOM05D000160 ORTHO05D000914 9.8e-12 73.9 80 42.5
DCAR_014632 Daucus carota HOM05D000160 ORTHO05D011801 9.8e-12 73.9 76 44.7
Gohir.A02G045600 Gossypium hirsutum HOM05D000160 ORTHO05D000914 9.8e-12 73.9 136 33.1
Sed0011495 Sechium edule HOM05D000160 ORTHO05D000914 9.8e-12 73.9 149 34.2
CANSAT78G2024 Cannabis sativa HOM05D000160 ORTHO05D000914 1.3e-11 73.6 76 43.4
PSO017G4076 Papaver somniferum HOM05D000160 ORTHO05D000914 1.3e-11 73.6 127 33.9
Potri.010G018800 Populus trichocarpa HOM05D000160 ORTHO05D000914 1.3e-11 73.6 75 48.0
CANSAT78G1266 Cannabis sativa HOM05D000160 ORTHO05D000914 2.2e-11 72.8 76 43.4
Eucgr.H03712 Eucalyptus grandis HOM05D000160 ORTHO05D000914 2.2e-11 72.8 76 42.1
Lj4g0025911 Lotus japonicus HOM05D000160 ORTHO05D000914 2.2e-11 72.8 78 43.6
Sed0018299 Sechium edule HOM05D000160 ORTHO05D000914 2.2e-11 72.8 76 46.1
Duzib052G0920 Durio zibethinus HOM05D000160 ORTHO05D000914 2.8e-11 72.4 141 34.0
CsaV3_6G005670 Cucumis sativus L. HOM05D000160 ORTHO05D000914 3.7e-11 72.0 76 46.1
PSO333G0005 Papaver somniferum HOM05D000160 ORTHO05D000914 3.7e-11 72.0 120 32.5
PGR004G2342 Punica granatum HOM05D000160 ORTHO05D000914 3.7e-11 72.0 73 43.8
Duzib151G0184 Durio zibethinus HOM05D000160 ORTHO05D000914 1.1e-10 70.5 141 32.6
RcHm_v2.0_Chr4g0420721 Rosa chinensis HOM05D000160 ORTHO05D000914 1.4e-10 70.1 84 40.5
PSO151G0105 Papaver somniferum HOM05D000160 ORTHO05D000914 3.1e-10 68.9 122 30.3
Duzib212G0642 Durio zibethinus HOM05D000160 ORTHO05D000914 4.1e-10 68.6 69 47.8
Hund20632 Selenicereus undatus HOM05D000160 ORTHO05D000914 4.1e-10 68.6 76 42.1
PSO210G0710 Papaver somniferum HOM05D000160 ORTHO05D000914 5.4e-10 68.2 89 34.8
PSO302G0260 Papaver somniferum HOM05D000160 ORTHO05D000914 7.0e-10 67.8 79 41.8
FvH4_2g06370 Fragaria vesca HOM05D000160 ORTHO05D000914 9.1e-10 67.4 77 45.5
MD13G1174800 Malus domestica HOM05D000160 ORTHO05D000914 9.1e-10 67.4 74 43.2
Ca_21555_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000914 1.2e-09 67.0 76 42.1
FAN24G0185 Fragaria x ananassa HOM05D000160 ORTHO05D000914 1.2e-09 67.0 77 45.5
PSO210G6226 Papaver somniferum HOM05D000160 ORTHO05D000914 1.2e-09 67.0 85 37.6
SHI00286 Sapria himalayana HOM05D000160 ORTHO05D000914 1.2e-09 67.0 77 44.2
Glyma.07G252300 Glycine max HOM05D000160 ORTHO05D000914 1.6e-09 66.6 70 44.3
VMungo0540G2387 Vigna mungo HOM05D000160 ORTHO05D000914 1.6e-09 66.6 105 35.2
MD16G1176500 Malus domestica HOM05D000160 ORTHO05D000914 2.0e-09 66.2 74 44.6
PSO170G2599 Papaver somniferum HOM05D000160 ORTHO05D000914 2.0e-09 66.2 79 41.8
PGSC0003DMG400043365 Solanum tuberosum HOM05D000160 ORTHO05D011801 2.0e-09 66.2 41 73.2
EL10Ac3g06556 Beta vulgaris HOM05D000160 ORTHO05D000914 2.7e-09 65.9 74 43.2
Glyma.17G022200 Glycine max HOM05D000160 ORTHO05D000914 2.7e-09 65.9 96 38.5
PSO339G0385 Papaver somniferum HOM05D000160 ORTHO05D000914 3.5e-09 65.5 70 40.0
Prupe.1G143400 Prunus persica HOM05D000160 ORTHO05D000914 3.5e-09 65.5 76 42.1
Thecc.04G275600 Theobroma cacao HOM05D000160 ORTHO05D000914 3.5e-09 65.5 75 42.7
TPR.G14961 Trifolium pratense HOM05D000160 ORTHO05D000914 3.5e-09 65.5 76 39.5
CANSAT78G1252 Cannabis sativa HOM05D000160 ORTHO05D000914 4.5e-09 65.1 56 46.4
FAN27G0892 Fragaria x ananassa HOM05D000160 ORTHO05D000914 4.5e-09 65.1 77 44.2
PSO210G5145 Papaver somniferum HOM05D000160 ORTHO05D000914 4.5e-09 65.1 83 36.1
FAN20G1760 Fragaria x ananassa HOM05D000160 ORTHO05D000914 5.9e-09 64.7 77 44.2
TWI09G1005 Tripterygium wilfordii HOM05D000160 ORTHO05D000914 5.9e-09 64.7 74 43.2
FAN15G2454 Fragaria x ananassa HOM05D000160 ORTHO05D000914 7.7e-09 64.3 77 44.2
Lalb_Chr13g0303931 Lupinus albus HOM05D000160 ORTHO05D000914 7.7e-09 64.3 76 38.2
Psat4g029760 Pisum sativum HOM05D000160 ORTHO05D000914 7.7e-09 64.3 74 37.8
TWI73G0317 Tripterygium wilfordii HOM05D000160 ORTHO05D000914 7.7e-09 64.3 75 41.3
Phvul.003G100000 Phaseolus vulgaris HOM05D000160 ORTHO05D000914 1.0e-08 63.9 74 41.9
THA.LOC104818838 Tarenaya hassleriana HOM05D000160 ORTHO05D000914 1.0e-08 63.9 133 27.8
Phvul.006G160400 Phaseolus vulgaris HOM05D000160 ORTHO05D000914 1.3e-08 63.5 81 39.5
VMungo1215G2528 Vigna mungo HOM05D000160 ORTHO05D000914 1.3e-08 63.5 74 41.9
Lalb_Chr20g0118211 Lupinus albus HOM05D000160 ORTHO05D000914 1.7e-08 63.2 83 37.3
PSO063G5242 Papaver somniferum HOM05D000160 ORTHO05D000914 1.7e-08 63.2 80 36.2
Psat1g186840 Pisum sativum HOM05D000160 ORTHO05D000914 1.7e-08 63.2 114 35.1
PGSC0003DMG400036172 Solanum tuberosum HOM05D000160 ORTHO05D011801 2.2e-08 62.8 82 40.2
Hund20631 Selenicereus undatus HOM05D000160 ORTHO05D000914 2.9e-08 62.4 76 36.8
THA.LOC104802729 Tarenaya hassleriana HOM05D000160 ORTHO05D000914 3.8e-08 62.0 133 27.8
Glyma.15G098900 Glycine max HOM05D000160 ORTHO05D000914 6.5e-08 61.2 81 38.3
Sc19g0004870 Simmondsia chinensis HOM05D000160 ORTHO05D000914 6.5e-08 61.2 76 38.2
Gorai.011G184900 Gossypium raimondii HOM05D000160 ORTHO05D000914 8.5e-08 60.8 78 35.9
PSO832G1520 Papaver somniferum HOM05D000160 ORTHO05D000914 8.5e-08 60.8 98 33.7
Medtr4g118660 Medicago truncatula HOM05D000160 ORTHO05D000914 1.5e-07 60.1 110 27.3
Sc25g0004670 Simmondsia chinensis HOM05D000160 ORTHO05D000914 1.5e-07 60.1 123 26.0
CANSAT78G0852 Cannabis sativa HOM05D000160 ORTHO05D000914 1.9e-07 59.7 76 39.5
Gohir.A10G101935 Gossypium hirsutum HOM05D000160 ORTHO05D000914 1.9e-07 59.7 56 44.6
Gohir.D10G165700 Gossypium hirsutum HOM05D000160 ORTHO05D000914 1.9e-07 59.7 56 44.6
arahy.Tifrunner.gnm1.ann1.ID495C Arachis hypogaea HOM05D000160 ORTHO05D000914 2.5e-07 59.3 76 36.8
CDE10G0496 Ceratophyllum demersum HOM05D000160 ORTHO05D000914 2.5e-07 59.3 149 27.5
PSO170G0392 Papaver somniferum HOM05D000160 ORTHO05D000914 2.5e-07 59.3 74 36.5
PSO478G5236 Papaver somniferum HOM05D000160 ORTHO05D000914 2.5e-07 59.3 80 35.0
PSO063G1134 Papaver somniferum HOM05D000160 ORTHO05D000914 3.2e-07 58.9 76 35.5
arahy.Tifrunner.gnm1.ann1.E4I4JS Arachis hypogaea HOM05D000160 ORTHO05D000914 4.2e-07 58.5 76 39.5
arahy.Tifrunner.gnm1.ann1.TJR5LV Arachis hypogaea HOM05D000160 ORTHO05D000914 4.2e-07 58.5 74 37.8
arahy.Tifrunner.gnm1.ann1.X7UX0V Arachis hypogaea HOM05D000160 ORTHO05D000914 4.2e-07 58.5 74 37.8
arahy.Tifrunner.gnm1.ann1.10ECP5 Arachis hypogaea HOM05D000160 ORTHO05D000914 5.5e-07 58.2 116 31.0
PSO782G5548 Papaver somniferum HOM05D000160 ORTHO05D000914 5.5e-07 58.2 80 36.2
Sopen01g029720 Solanum pennellii HOM05D000160 ORTHO05D000914 5.5e-07 58.2 65 47.7
GSVIVG01021980001 Vitis vinifera HOM05D000160 ORTHO05D000914 5.5e-07 58.2 76 35.5
PSO063G4975 Papaver somniferum HOM05D000160 ORTHO05D011801 7.2e-07 57.8 73 34.2
CDE10G0835 Ceratophyllum demersum HOM05D000160 ORTHO05D000914 1.6e-06 56.6 149 26.2
Glyma.13G214300 Glycine max HOM05D000160 ORTHO05D000914 1.6e-06 56.6 81 35.8
C03p10550 Brassica napus HOM05D000160 ORTHO05D000914 2.7e-06 55.8 121 33.9
Duzib151G0392 Durio zibethinus HOM05D000160 ORTHO05D000914 2.7e-06 55.8 144 30.6
Oeu033944.1 Olea europaea HOM05D000160 ORTHO05D000914 2.7e-06 55.8 77 32.5
PSO170G3765 Papaver somniferum HOM05D000160 ORTHO05D000914 2.7e-06 55.8 76 36.8
TPR.G30681 Trifolium pratense HOM05D000160 ORTHO05D000914 2.7e-06 55.8 44 50.0
HanXRQChr03g0078071 Helianthus annuus HOM05D000160 ORTHO05D000914 3.6e-06 55.5 61 36.1
PSO782G5433 Papaver somniferum HOM05D000160 ORTHO05D000914 3.6e-06 55.5 97 33.0
BcaB08g36646 Brassica carinata HOM05D000160 ORTHO05D000914 4.7e-06 55.1 74 33.8
ClCG03G016570 Citrullus lanatus HOM05D000160 ORTHO05D000914 4.7e-06 55.1 73 34.2
Migut.K01226 Erythranthe guttata HOM05D000160 ORTHO05D000914 4.7e-06 55.1 122 28.7
Zm00001eb334270 Zea mays HOM05D000160 ORTHO05D000914 4.7e-06 55.1 74 27.0
Migut.J00574 Erythranthe guttata HOM05D000160 ORTHO05D000914 6.1e-06 54.7 122 28.7
Os11g0574200 Oryza sativa ssp. japonica HOM05D000160 ORTHO05D000914 6.1e-06 54.7 59 37.3
PSO339G3731 Papaver somniferum HOM05D000160 ORTHO05D000914 6.1e-06 54.7 128 28.1
ATR0706G003 Amborella trichopoda HOM05D000160 ORTHO05D000914 8.0e-06 54.3 73 35.6
BcaB08g36649 Brassica carinata HOM05D000160 ORTHO05D000914 8.0e-06 54.3 127 32.3
BolC3t13536H Brassica oleracea HOM05D000160 ORTHO05D000914 8.0e-06 54.3 121 33.1
PSO478G2626 Papaver somniferum HOM05D000160 ORTHO05D000914 8.0e-06 54.3 84 32.1
PSO782G1360 Papaver somniferum HOM05D000160 ORTHO05D000914 8.0e-06 54.3 98 29.6
SGA_v2.0_scaffold192G40626 Striga asiatica HOM05D000160 ORTHO05D000914 8.0e-06 54.3 84 31.0


User provided reference genes

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