Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g017530 Solanum pennellii HOM05D035507 ORTHO05D003543 1.4e-62 242.7 116 100.0
Solyc07g038190.3 Solanum lycopersicum HOM05D035507 ORTHO05D003543 1.9e-59 232.3 116 95.7
PGSC0003DMG400013153 Solanum tuberosum HOM05D035507 ORTHO05D003543 8.4e-55 216.9 119 91.6
Nitab4.5_0005033g0020 Nicotiana tabacum HOM05D003196 ORTHO05D003543 2.1e-37 159.1 100 78.0
Nitab4.5_0005634g0090 Nicotiana tabacum HOM05D003196 ORTHO05D003543 3.6e-37 158.3 99 75.8
MSTRG.6059 Avicennia marina HOM05D003196 ORTHO05D003543 2.2e-10 69.3 88 43.2
Cc06_g11370 Coffea canephora HOM05D003196 ORTHO05D003543 2.8e-10 68.9 93 46.2
Psat4g014720 Pisum sativum HOM05D003196 ORTHO05D003543 8.3e-10 67.4 94 40.4
COL.COLO4_30652 Corchorus olitorius HOM05D000032 ORTHO05D002561 1.1e-09 67.0 95 42.1
Sed0023272 Sechium edule HOM05D003196 ORTHO05D003543 1.1e-09 67.0 87 41.4
PGR102G1948 Punica granatum HOM05D003196 ORTHO05D003543 4.1e-09 65.1 111 40.5
RcHm_v2.0_Chr2g0142911 Rosa chinensis HOM05D003196 ORTHO05D003543 7.0e-09 64.3 93 46.2
Glyma.17G055300 Glycine max HOM05D003196 ORTHO05D003543 9.1e-09 63.9 96 38.5
FAN05G4539 Fragaria x ananassa HOM05D003196 ORTHO05D003543 1.2e-08 63.5 98 40.8
TPR.G5401 Trifolium pratense HOM05D003196 ORTHO05D003543 1.2e-08 63.5 94 37.2
Rhsim03G0232800 Rhododendron simsii HOM05D003196 ORTHO05D003543 2.0e-08 62.8 95 41.1
MD09G1194300 Malus domestica HOM05D003196 ORTHO05D003543 2.7e-08 62.4 89 43.8
Dinv36763 Davidia involucrata HOM05D003196 ORTHO05D003543 3.5e-08 62.0 90 43.3
Oeu018419.1 Olea europaea HOM05D003196 ORTHO05D003543 3.5e-08 62.0 89 42.7
vmacro06288 Vaccinium macrocarpon HOM05D003196 ORTHO05D003543 3.5e-08 62.0 88 45.5
vmacro23431 Vaccinium macrocarpon HOM05D003196 ORTHO05D003543 3.5e-08 62.0 88 45.5
Actinidia29882 Actinidia chinensis HOM05D003196 ORTHO05D003543 4.5e-08 61.6 105 41.0
Ciclev10009803m.g Citrus clementina HOM05D003196 ORTHO05D003543 4.5e-08 61.6 118 35.6
SGA_v2.0_scaffold260G45874 Striga asiatica HOM05D003196 ORTHO05D003543 4.5e-08 61.6 89 41.6
Medtr4g126360 Medicago truncatula HOM05D003196 ORTHO05D003543 5.9e-08 61.2 111 33.3
FvH4_6g33180 Fragaria vesca HOM05D003196 ORTHO05D003543 7.7e-08 60.8 98 39.8
FAN14G0807 Fragaria x ananassa HOM05D003196 ORTHO05D003543 1.7e-07 59.7 98 39.8
HanXRQChr10g0313061 Helianthus annuus HOM05D003196 ORTHO05D003543 1.7e-07 59.7 87 37.9
Phvul.003G137200 Phaseolus vulgaris HOM05D003196 ORTHO05D003543 1.7e-07 59.7 93 35.5
QL04p071305 Quercus lobata HOM05D003196 ORTHO05D003543 1.7e-07 59.7 91 41.8
Hund20859 Selenicereus undatus HOM05D003196 ORTHO05D003543 1.7e-07 59.7 95 36.8
VMungo1215G1650 Vigna mungo HOM05D003196 ORTHO05D003543 2.3e-07 59.3 107 34.6
MELO3C024395.2 Cucumis melo HOM05D003196 ORTHO05D003543 2.9e-07 58.9 88 42.0
THA.LOC104822633 Tarenaya hassleriana HOM05D003196 ORTHO05D003543 2.9e-07 58.9 101 33.7
CsaV3_7G034840 Cucumis sativus L. HOM05D003196 ORTHO05D003543 3.8e-07 58.5 88 40.9
Nn8g38879 Nelumbo nucifera HOM05D003196 ORTHO05D003543 3.8e-07 58.5 98 39.8
Cpa.g.sc93.25 Carica papaya HOM05D003196 ORTHO05D003543 5.0e-07 58.2 113 38.1
TAR636G1648 Trochodendron aralioides HOM05D003196 ORTHO05D003543 6.6e-07 57.8 92 40.2
PSO063G3162 Papaver somniferum HOM05D003196 ORTHO05D003543 8.6e-07 57.4 92 34.8
CiPaw.02G140800 Carya illinoinensis HOM05D003196 ORTHO05D003543 1.1e-06 57.0 99 38.4
ClCG09G000640 Citrullus lanatus HOM05D003196 ORTHO05D003543 1.1e-06 57.0 88 42.0
Eucgr.F03128 Eucalyptus grandis HOM05D003196 ORTHO05D003543 1.1e-06 57.0 107 38.3
Lalb_Chr12g0199771 Lupinus albus HOM05D003196 ORTHO05D003543 1.1e-06 57.0 93 34.4
Ah.14g085200 Amaranthus hybridus HOM05D003196 ORTHO05D003543 1.5e-06 56.6 102 37.3
Ah.15g094190 Amaranthus hybridus HOM05D003196 ORTHO05D003543 1.5e-06 56.6 98 37.8
Potri.001G200200 Populus trichocarpa HOM05D003196 ORTHO05D003543 1.9e-06 56.2 88 39.8
Sed0009658 Sechium edule HOM05D003196 ORTHO05D003543 1.9e-06 56.2 90 41.1
Duzib168G2228 Durio zibethinus HOM05D003196 ORTHO05D003543 2.5e-06 55.8 105 35.2
Gohir.D10G061900 Gossypium hirsutum HOM05D003196 ORTHO05D003543 5.5e-06 54.7 90 38.9
Gorai.011G066100 Gossypium raimondii HOM05D003196 ORTHO05D003543 5.5e-06 54.7 90 38.9
Lsat_1_v5_gn_7_37320 Lactuca sativa HOM05D003196 ORTHO05D003543 5.5e-06 54.7 82 41.5
EL10Ac8g19223 Beta vulgaris HOM05D003196 ORTHO05D003543 7.2e-06 54.3 100 37.0
MD17G1174800 Malus domestica HOM05D003196 ORTHO05D003543 7.2e-06 54.3 89 38.2
CiPaw.03G216800 Carya illinoinensis HOM05D003196 ORTHO05D003543 9.5e-06 53.9 96 37.5
Ca_23312_v3 Cicer arietinum L. HOM05D003196 ORTHO05D003543 9.5e-06 53.9 88 36.4
Duzib192G0676 Durio zibethinus HOM05D003196 ORTHO05D003543 9.5e-06 53.9 88 42.0
Duzib235G0666 Durio zibethinus HOM05D003196 ORTHO05D003543 9.5e-06 53.9 94 40.4
Thecc.06G109100 Theobroma cacao HOM05D003196 ORTHO05D003543 9.5e-06 53.9 94 40.4


User provided reference genes

Program Settings