Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 7.0e-113 410.6 205 100.0
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.3e-111 405.6 205 98.5
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 5.0e-111 404.4 205 98.0
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 7.1e-105 384.0 206 93.2
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.5e-104 381.7 204 92.6
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.0e-95 353.6 204 85.8
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.6e-93 345.1 205 81.5
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.8e-92 342.8 205 80.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.4e-92 342.4 205 80.5
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 9.3e-89 330.5 205 77.1
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.6e-88 329.7 205 78.0
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 3.5e-88 328.6 207 78.7
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.3e-87 326.6 205 80.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 3.9e-87 325.1 205 77.1
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 8.7e-87 323.9 205 76.1
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 2.8e-85 318.9 207 75.4
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 3.6e-85 318.5 205 77.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.2e-85 317.8 205 74.6
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 6.2e-85 317.8 205 75.1
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 6.2e-85 317.8 205 75.1
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.1e-84 317.0 205 73.2
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.1e-84 317.0 205 74.6
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 4.0e-84 315.1 206 75.2
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 1.2e-83 313.5 204 72.5
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 2.0e-83 312.8 205 75.1
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.6e-83 312.4 205 76.6
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.4e-83 312.0 205 73.7
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 9.9e-83 310.5 208 74.0
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.7e-82 309.7 205 72.7
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.9e-82 308.9 205 72.2
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.9e-82 308.9 206 72.8
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 2.9e-82 308.9 195 76.4
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 4.9e-82 308.1 203 71.4
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 4.9e-82 308.1 204 74.0
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 8.4e-82 307.4 204 73.0
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 8.4e-82 307.4 204 73.0
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.9e-81 306.2 206 72.3
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 1.9e-81 306.2 205 72.7
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 2.4e-81 305.8 203 74.9
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.4e-81 305.8 205 72.7
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.4e-81 305.8 205 72.7
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.2e-80 303.5 205 74.1
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.5e-80 302.0 205 71.7
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.6e-80 301.6 205 71.7
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 7.9e-80 300.8 208 70.2
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.0e-79 300.4 204 70.6
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 5.1e-79 298.1 197 75.1
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.1e-78 297.0 205 71.2
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.9e-78 296.2 199 70.9
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.9e-78 296.2 206 70.4
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 3.3e-78 295.4 206 70.9
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 4.3e-78 295.0 228 65.4
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 4.3e-78 295.0 205 72.7
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 5.6e-78 294.7 199 71.4
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 9.6e-78 293.9 205 70.2
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.6e-77 293.1 204 72.5
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 3.6e-77 292.0 199 70.4
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 4.8e-77 291.6 203 70.0
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 8.1e-77 290.8 206 69.4
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.4e-76 290.0 206 69.4
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 1.4e-76 290.0 199 69.3
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 2.4e-76 289.3 205 67.3
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 3.1e-76 288.9 205 66.8
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 5.3e-76 288.1 204 69.1
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 5.3e-76 288.1 204 69.1
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 5.3e-76 288.1 206 70.4
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 5.3e-76 288.1 204 69.1
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 6.9e-76 287.7 204 68.1
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 6.9e-76 287.7 206 68.4
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 6.9e-76 287.7 204 69.1
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-75 287.0 204 67.6
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-75 287.0 204 69.1
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.2e-75 287.0 204 67.6
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 2.0e-75 286.2 204 68.1
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.6e-75 285.8 203 67.0
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.6e-75 285.8 203 67.0
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 2.6e-75 285.8 204 67.2
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 4.5e-75 285.0 199 69.3
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 5.8e-75 284.6 206 67.5
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 9.9e-75 283.9 208 66.8
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.3e-74 283.5 199 67.8
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.7e-74 283.1 204 68.1
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.7e-74 283.1 199 68.8
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.2e-74 282.7 199 67.8
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 2.9e-74 282.3 204 67.6
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 2.9e-74 282.3 204 68.1
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.9e-74 282.3 205 65.9
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 2.9e-74 282.3 204 68.1
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 3.8e-74 282.0 204 68.6
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 3.8e-74 282.0 204 68.6
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 3.8e-74 282.0 204 68.6
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 3.8e-74 282.0 206 69.4
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 3.8e-74 282.0 206 67.0
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 3.8e-74 282.0 199 69.3
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 4.9e-74 281.6 204 68.6
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 4.9e-74 281.6 204 67.6
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 4.9e-74 281.6 257 58.0
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 8.4e-74 280.8 210 67.6
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.4e-73 280.0 204 68.1
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 2.4e-73 279.3 203 69.0
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 3.2e-73 278.9 204 68.1
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 7.1e-73 277.7 203 67.0
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 7.1e-73 277.7 205 67.8
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.2e-72 276.9 203 70.4
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.1e-72 276.2 203 70.0
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 2.7e-72 275.8 207 68.6
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 3.5e-72 275.4 200 66.5
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 7.9e-72 274.2 205 69.8
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-71 273.9 206 68.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.3e-71 272.7 204 66.2
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 3.9e-71 271.9 194 69.1
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.3e-70 268.9 214 62.6
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 3.3e-70 268.9 205 62.0
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 7.4e-70 267.7 205 65.9
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 3.7e-69 265.4 206 61.2
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.6e-67 259.2 141 92.2
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 3.5e-64 248.8 206 60.2
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 5.1e-63 245.0 194 63.4
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 4.1e-60 235.3 208 54.3
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 4.2e-57 225.3 209 53.6
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.1e-55 218.4 215 53.0
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.7e-53 212.2 209 52.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.3e-53 211.5 155 72.3
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 6.3e-53 211.5 206 57.3
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 6.3e-53 211.5 209 51.2
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.0e-51 206.5 140 72.9
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.0e-51 206.5 148 68.2
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 7.7e-51 204.5 149 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.1e-46 190.7 207 47.8
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 5.7e-46 188.3 181 57.5
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.7e-45 186.8 149 67.1
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 5.5e-41 171.8 134 63.4
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 6.1e-40 168.3 127 64.6
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 7.7e-27 124.8 191 37.2
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 9.4e-25 117.9 193 35.2
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.4e-23 114.0 128 46.9
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.2e-22 110.9 138 47.8
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.5e-22 110.5 197 36.5
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.3e-21 107.5 66 74.2
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 6.3e-21 105.1 73 63.0
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 8.3e-21 104.8 67 73.1
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.2e-19 100.9 100 50.0
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.7e-18 97.1 69 72.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 2.6e-14 83.2 74 59.5
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.1e-12 77.8 51 70.6
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 9.2e-12 74.7 63 58.7
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.1e-09 67.8 68 51.5
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.5e-09 66.6 50 66.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.5e-09 66.6 50 66.0
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.4e-07 60.8 115 31.3
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 3.0e-07 59.7 42 59.5
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 3.4e-06 56.2 81 32.1


User provided reference genes

Program Settings