Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 5.1e-304 1047.0 537 100.0
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.6e-265 917.9 534 89.5
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.0e-159 566.6 537 63.7
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 5.0e-134 482.3 539 51.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 5.0e-126 455.7 535 46.4
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.0e-123 446.4 536 46.1
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-120 438.0 539 46.0
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-120 438.0 539 46.0
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.4e-120 437.6 538 47.2
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 3.5e-119 433.0 536 45.7
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.0e-115 421.4 538 45.5
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.4e-115 421.0 539 44.5
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 2.6e-114 416.8 534 45.5
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 6.3e-113 412.1 536 43.1
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 6.3e-113 412.1 535 45.2
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.4e-112 411.0 539 45.1
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.6e-111 407.5 545 43.3
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 3.5e-111 406.4 541 44.2
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 9.5e-109 398.3 540 41.7
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.8e-107 394.0 536 44.6
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.6e-103 380.9 549 43.4
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 7.8e-103 378.6 540 42.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 3.0e-102 376.7 537 41.7
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 4.3e-101 372.9 525 42.7
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.2e-100 371.3 537 40.6
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.1e-99 366.7 543 41.6
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 6.8e-99 365.5 536 41.4
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 2.6e-98 363.6 266 75.9
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 3.4e-98 363.2 541 42.5
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 2.4e-96 357.1 532 42.3
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 3.2e-96 356.7 440 45.0
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.7e-95 353.6 548 40.5
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 3.5e-95 353.2 498 41.6
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 4.6e-95 352.8 538 39.0
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 2.3e-94 350.5 546 40.1
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 3.0e-94 350.1 538 40.3
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 5.6e-93 345.9 546 39.9
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 3.1e-91 340.1 539 39.5
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 3.4e-90 336.7 541 38.6
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 5.8e-90 335.9 545 40.6
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 5.8e-90 335.9 540 38.5
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-89 334.7 521 42.2
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.6e-87 327.8 536 38.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.8e-87 325.5 540 39.1
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.9e-85 320.9 458 39.1
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.3e-85 320.1 539 36.9
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 6.2e-84 315.8 539 36.7
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 6.2e-84 315.8 538 36.6
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.1e-84 315.5 436 42.7
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.1e-83 313.5 562 37.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 3.1e-83 313.5 490 41.6
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 2.0e-82 310.8 537 36.5
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.6e-82 310.5 486 39.9
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 9.9e-82 308.5 519 38.2
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.2e-81 307.4 542 38.7
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.2e-81 307.4 543 38.3
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 2.9e-81 307.0 535 37.4
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.9e-81 306.2 483 39.8
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.4e-81 305.8 540 36.9
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.1e-80 305.1 499 39.3
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 7.1e-80 302.4 528 36.4
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 9.2e-80 302.0 540 36.7
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 5.6e-77 292.7 516 36.8
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.3e-77 292.4 489 36.8
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.5e-74 284.6 494 37.4
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.3e-73 281.6 541 35.1
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.3e-73 281.6 517 35.2
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.3e-73 281.6 530 36.0
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.1e-72 278.5 523 34.6
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.4e-72 278.1 489 34.4
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 9.3e-72 275.4 512 35.5
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.1e-71 274.2 504 35.1
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.0e-70 271.9 506 35.6
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.9e-69 267.7 506 36.0
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.5e-69 267.3 516 33.9
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 4.3e-69 266.5 512 34.8
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.8e-68 263.1 512 33.6
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.2e-68 262.7 527 31.7
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.8e-67 261.2 486 34.6
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.1e-67 260.4 540 34.1
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 9.0e-67 258.8 511 34.4
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 7.6e-66 255.8 515 35.0
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.2e-65 254.2 510 34.1
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.8e-65 253.4 502 34.1
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.4e-64 250.8 500 33.8
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 2.4e-64 250.8 532 33.3
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 3.2e-64 250.4 535 33.8
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.6e-63 248.1 481 33.1
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 2.7e-63 247.3 516 33.9
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.0e-62 245.4 538 31.2
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.9e-61 241.1 520 33.3
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.9e-61 241.1 492 32.1
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.8e-60 237.3 362 37.6
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.4e-59 234.2 537 32.6
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.4e-59 234.2 358 37.2
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 9.9e-58 228.8 303 43.9
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.2e-57 227.6 490 31.6
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 4.9e-57 226.5 498 31.7
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.2e-56 223.8 485 30.5
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 9.3e-56 222.2 256 52.7
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.1e-55 221.1 265 47.2
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.7e-55 220.7 525 33.3
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.6e-55 219.9 485 29.9
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 7.9e-55 219.2 537 33.5
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.0e-54 218.8 356 36.5
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 3.0e-54 217.2 496 31.0
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 6.7e-54 216.1 490 30.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 7.4e-53 212.6 409 35.2
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 9.6e-53 212.2 510 28.8
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.1e-52 211.1 538 31.8
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-51 208.8 512 29.3
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.1e-51 208.8 498 28.7
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.8e-51 208.0 512 31.2
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.8e-51 208.0 511 29.9
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.8e-51 208.0 511 29.9
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.1e-51 207.2 487 31.4
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 4.0e-51 206.8 548 28.8
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 4.0e-51 206.8 501 28.5
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.5e-50 204.9 488 29.7
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 5.8e-50 203.0 495 30.3
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 7.6e-50 202.6 266 39.8
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.3e-49 201.8 487 29.0
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.9e-49 200.7 540 30.9
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 6.5e-49 199.5 287 37.6
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 3.2e-48 197.2 516 31.2
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 5.5e-48 196.4 342 37.1
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.6e-47 194.9 392 30.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.6e-47 194.9 569 29.5
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 4.6e-47 193.4 250 44.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 4.6e-47 193.4 248 45.2
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 7.9e-47 192.6 274 42.0
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 5.1e-46 189.9 521 29.8
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 8.7e-46 189.1 522 29.7
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.5e-45 187.6 525 29.9
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 7.4e-45 186.0 508 29.3
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 9.6e-45 185.7 493 28.0
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 3.1e-43 180.6 460 29.1
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 6.9e-43 179.5 555 26.1
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 9.0e-43 179.1 525 27.4
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.5e-42 178.3 485 27.2
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.5e-42 178.3 496 28.4
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 2.0e-42 177.9 493 28.2
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.3e-41 175.3 401 30.4
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.2e-41 174.5 432 29.4
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.5e-40 171.0 277 36.1
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.3e-38 164.5 403 30.3
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 5.1e-38 163.3 272 35.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.7e-38 162.9 240 40.8
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.3e-36 158.7 405 29.4
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 2.2e-36 157.9 309 35.3
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.1e-35 153.7 508 25.0
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 2.0e-34 151.4 498 27.9
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 7.7e-34 149.4 499 27.5
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.0e-33 149.1 502 27.5
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 7.2e-32 142.9 264 35.6
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.7e-28 131.7 302 32.5
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 4.5e-26 123.6 486 26.5
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 6.5e-25 119.8 258 29.1
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.5e-24 116.7 256 31.6
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.2e-23 115.5 277 31.4
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 5.2e-22 110.2 294 29.6
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 8.8e-22 109.4 289 29.4
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 4.4e-21 107.1 258 31.8
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 1.6e-18 98.6 173 36.4
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 3.5e-18 97.4 266 29.3
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 4.5e-18 97.1 128 43.0
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 5.0e-17 93.6 173 35.8
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 6.5e-17 93.2 171 33.9
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 7.2e-16 89.7 134 37.3
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.0e-14 84.3 207 34.3
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.5e-13 82.0 246 28.0
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 4.1e-11 73.9 536 21.8
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 7.0e-11 73.2 481 21.6
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.2e-10 72.4 284 26.4
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 5.5e-08 63.5 147 29.9
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 1.8e-06 58.5 120 31.7


User provided reference genes

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