Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 0.0e+00 1393.6 762 100.0
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 0.0e+00 1346.6 762 97.2
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 0.0e+00 1107.0 817 81.2
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.1e-275 953.4 823 70.0
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 2.0e-274 949.1 787 72.9
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 7.5e-269 930.6 823 69.1
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 4.3e-248 861.7 782 66.1
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 9.2e-142 508.4 783 46.5
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 8.4e-127 458.8 577 50.8
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 4.6e-125 453.0 789 44.0
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 4.3e-123 446.4 779 43.4
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 1.4e-121 441.4 711 44.4
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 1.4e-121 441.4 796 42.8
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 3.1e-121 440.3 797 43.0
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.4e-118 431.4 781 43.3
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 2.4e-118 430.6 695 43.3
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 6.0e-117 426.0 616 47.9
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 8.7e-116 422.2 800 42.1
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 4.3e-115 419.9 792 40.2
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 8.4e-111 405.6 778 42.9
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 1.1e-110 405.2 813 41.0
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 9.3e-110 402.1 807 40.4
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 9.3e-110 402.1 828 41.2
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 4.6e-109 399.8 795 41.1
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 2.3e-108 397.5 770 41.7
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 1.1e-107 395.2 809 40.4
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 2.1e-106 391.0 853 37.7
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 2.1e-106 391.0 625 43.7
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.1e-105 388.7 883 37.5
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 5.8e-104 382.9 815 39.5
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 8.4e-103 379.0 620 43.5
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 4.2e-102 376.7 775 39.2
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 2.1e-101 374.4 772 39.5
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 3.5e-101 373.6 794 37.7
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 1.8e-100 371.3 783 40.7
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 4.1e-97 360.1 747 40.7
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 5.3e-97 359.8 827 37.6
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.3e-95 355.1 580 43.1
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 2.2e-95 354.4 643 40.4
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 1.1e-94 352.1 802 38.5
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 1.1e-94 352.1 629 41.3
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 1.9e-94 351.3 793 38.5
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 4.2e-94 350.1 772 37.2
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 1.4e-92 345.1 787 38.2
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 2.3e-92 344.4 683 40.4
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 2.3e-92 344.4 653 41.8
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 3.9e-92 343.6 581 43.4
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 4.3e-91 340.1 543 42.2
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 7.4e-91 339.3 751 38.6
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 6.3e-90 336.3 775 37.7
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.4e-89 335.1 774 37.7
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 4.1e-89 333.6 790 37.1
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 1.2e-88 332.0 765 37.5
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 1.5e-88 331.6 577 43.7
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 2.2e-87 327.8 774 37.5
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 2.2e-87 327.8 553 44.5
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 5.0e-87 326.6 544 44.5
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 8.5e-87 325.9 772 37.0
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 1.9e-86 324.7 541 42.3
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 3.6e-85 320.5 783 37.3
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 1.8e-84 318.2 807 37.1
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 2.3e-84 317.8 797 36.6
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 3.0e-84 317.4 567 45.1
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 3.9e-84 317.0 784 37.6
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 8.8e-84 315.8 747 36.5
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 1.1e-83 315.5 809 36.6
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 2.6e-83 314.3 591 43.0
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 3.3e-83 313.9 652 39.7
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 5.7e-83 313.2 602 42.5
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 2.8e-82 310.8 778 36.1
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 5.7e-75 286.6 600 39.7
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 2.8e-74 284.3 775 37.0
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 8.2e-74 282.7 588 40.8
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.6e-72 278.5 554 39.9
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.6e-72 278.5 554 39.9
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.3e-71 275.4 784 35.7
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 8.5e-71 272.7 726 36.8
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 9.4e-70 269.2 287 54.4
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 4.1e-65 253.8 616 34.7
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 1.5e-62 245.4 713 34.4
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 2.7e-61 241.1 770 31.6
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 2.6e-59 234.6 580 34.1
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 3.4e-59 234.2 629 38.0
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 1.7e-58 231.9 624 36.1
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 4.1e-57 227.3 591 36.7
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 1.2e-56 225.7 609 35.6
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 1.0e-55 222.6 596 35.6
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 1.7e-55 221.9 688 33.6
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 2.3e-55 221.5 592 36.7
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 8.6e-55 219.5 638 34.8
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 5.5e-54 216.9 753 32.1
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 7.2e-54 216.5 608 34.5
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 9.5e-54 216.1 777 31.3
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 2.8e-53 214.5 629 34.5
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 4.7e-53 213.8 394 38.8
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 8.0e-53 213.0 614 35.2
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 1.8e-52 211.8 613 35.6
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 1.2e-51 209.1 612 35.3
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 1.2e-51 209.1 612 35.3
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 1.2e-51 209.1 634 34.5
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 1.1e-46 192.6 611 33.9
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 1.7e-42 178.7 423 38.8
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.9e-41 175.3 470 33.6
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 1.9e-38 165.2 154 64.9
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 2.5e-38 164.9 304 41.8
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 5.2e-36 157.1 594 30.8
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 1.7e-34 152.1 535 32.0
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 1.6e-32 145.6 606 31.0
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 9.9e-27 126.3 504 29.0
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.2e-26 125.2 497 31.4
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 2.5e-22 111.7 200 41.0
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.6e-21 107.8 727 24.8
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.6e-21 107.8 727 24.8
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 1.9e-17 95.5 142 45.8
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 4.2e-17 94.4 147 46.9
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 4.9e-10 70.9 61 65.6


User provided reference genes

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