Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 3.4e-169 598.2 296 100.0
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 4.9e-115 418.3 218 96.3
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 1.4e-98 363.6 208 90.4
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 9.7e-55 218.0 391 43.5
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 1.2e-49 201.1 344 43.9
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.5e-31 141.0 327 36.7
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.2e-25 121.3 101 62.4
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.3e-19 101.3 99 63.6
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 6.5e-19 99.0 287 30.0
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.0e-16 91.7 140 49.3
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 1.0e-16 91.7 150 44.7
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 2.3e-16 90.5 91 52.7
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 1.2e-15 88.2 138 44.2
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.5e-15 87.8 157 40.1
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 2.6e-15 87.0 112 50.0
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 2.6e-15 87.0 104 46.2
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.6e-15 87.0 78 56.4
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 3.4e-15 86.7 68 57.4
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 4.4e-15 86.3 126 45.2
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 7.5e-15 85.5 134 43.3
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 7.5e-15 85.5 112 49.1
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.3e-14 84.7 85 52.9
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 1.3e-14 84.7 157 38.9
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 3.7e-14 83.2 84 53.6
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 6.3e-14 82.4 134 44.0
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 3.1e-13 80.1 95 47.4
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 3.1e-13 80.1 97 47.4
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 1.2e-12 78.2 63 63.5
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 1.2e-12 78.2 71 59.2
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 1.2e-12 78.2 129 43.4
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 1.6e-12 77.8 121 43.8
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 1.6e-12 77.8 120 42.5
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 3.5e-12 76.6 278 29.9
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 4.5e-12 76.3 84 50.0
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 5.9e-12 75.9 80 53.8
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 7.8e-12 75.5 67 58.2
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 1.0e-11 75.1 157 36.3
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 1.7e-11 74.3 160 36.9
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 2.3e-11 73.9 100 47.0
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 2.3e-11 73.9 95 47.4
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 2.3e-11 73.9 82 52.4
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 3.8e-11 73.2 119 42.0
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 3.8e-11 73.2 99 46.5
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 5.0e-11 72.8 130 37.7
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 5.0e-11 72.8 60 58.3
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 8.6e-11 72.0 114 44.7
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 8.6e-11 72.0 90 44.4
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.1e-10 71.6 120 45.0
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.1e-10 71.6 120 45.0
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.5e-10 71.2 99 40.4
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 1.5e-10 71.2 104 44.2
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 1.9e-10 70.9 103 43.7
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 1.9e-10 70.9 121 40.5
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 1.9e-10 70.9 218 32.6
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 1.9e-10 70.9 60 58.3
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 2.5e-10 70.5 97 44.3
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 3.3e-10 70.1 95 47.4
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 3.3e-10 70.1 67 55.2
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 4.3e-10 69.7 130 37.7
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 4.3e-10 69.7 130 43.1
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 4.3e-10 69.7 130 43.1
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 4.3e-10 69.7 60 61.7
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 5.6e-10 69.3 148 37.2
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 5.6e-10 69.3 87 46.0
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 7.3e-10 68.9 80 46.2
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 7.3e-10 68.9 68 51.5
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 7.3e-10 68.9 126 42.1
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.2e-09 68.2 90 42.2
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.6e-09 67.8 101 44.6
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 1.6e-09 67.8 101 44.6
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.6e-09 67.8 130 36.2
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 1.6e-09 67.8 68 54.4
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.6e-09 67.8 87 43.7
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.6e-09 67.8 98 43.9
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 1.6e-09 67.8 144 38.9
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 2.1e-09 67.4 129 39.5
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 2.8e-09 67.0 100 42.0
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 2.8e-09 67.0 93 47.3
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 2.8e-09 67.0 116 40.5
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 3.6e-09 66.6 95 45.3
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 3.6e-09 66.6 68 52.9
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 3.6e-09 66.6 68 52.9
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 3.6e-09 66.6 68 52.9
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 3.6e-09 66.6 68 52.9
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 3.6e-09 66.6 95 43.2
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 3.6e-09 66.6 113 40.7
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 4.7e-09 66.2 55 56.4
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 1.0e-08 65.1 106 41.5
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 3.0e-08 63.5 72 52.8
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 3.0e-08 63.5 110 41.8
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 1.2e-07 61.6 158 35.4
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 2.0e-07 60.8 94 43.6
Thecc.09G176700 Theobroma cacao HOM05D018436 ORTHO05D025173 5.7e-07 59.3 90 41.1
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 1.7e-06 57.8 120 33.3
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 2.2e-06 57.4 109 32.1
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 2.2e-06 57.4 61 52.5
SEGI_10504 Sequoiadendron giganteum HOM05D037339 ORTHO05D037588 2.9e-06 57.0 70 50.0
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 3.7e-06 56.6 120 40.0
Hma1.2p1_2270F.1_g318540 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 4.9e-06 56.2 61 47.5
Sed0006032 Sechium edule HOM05D002277 ORTHO05D001770 6.4e-06 55.8 86 41.9


User provided reference genes

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