Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 0.0e+00 1315.1 690 100.0
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 0.0e+00 1209.5 644 98.6
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 0.0e+00 1172.9 690 89.4
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 0.0e+00 1149.0 691 87.4
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 0.0e+00 1118.2 690 85.8
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 0.0e+00 1106.3 690 85.4
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 3.3e-311 1071.2 690 80.6
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 7.1e-311 1070.1 690 80.6
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 9.4e-303 1043.1 692 78.8
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 4.5e-289 997.7 685 74.3
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.5e-287 992.6 685 75.0
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 9.8e-284 979.9 692 73.8
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 3.5e-281 971.5 686 71.7
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 8.6e-280 966.8 692 73.1
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.1e-279 966.5 692 72.4
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.6e-278 961.4 693 73.2
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 1.0e-277 959.9 692 71.5
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 2.3e-277 958.7 691 71.3
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 3.9e-272 941.4 689 70.4
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 5.6e-271 937.6 706 68.8
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 9.5e-271 936.8 687 70.3
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 5.8e-268 927.5 689 69.5
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 1.3e-267 926.4 692 68.6
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 1.7e-267 926.0 800 63.2
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 3.7e-267 924.9 711 67.5
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 6.4e-267 924.1 689 68.8
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.1e-266 923.3 690 68.0
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 4.1e-266 921.4 694 68.3
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 5.4e-266 921.0 692 68.4
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 7.8e-265 917.1 691 67.9
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.3e-264 916.4 685 69.2
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.3e-264 915.6 690 67.5
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.3e-264 915.6 646 72.9
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 3.9e-264 914.8 690 68.7
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 3.3e-263 911.8 688 68.8
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 7.3e-263 910.6 689 66.9
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.1e-262 909.1 690 67.4
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 3.6e-262 908.3 685 69.2
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 2.3e-261 905.6 688 68.2
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 4.0e-261 904.8 690 67.8
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 6.8e-261 904.0 694 68.2
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 1.5e-260 902.9 691 67.7
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 9.9e-260 900.2 687 68.3
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.7e-259 899.4 689 68.1
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 2.2e-259 899.0 711 66.4
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 8.3e-259 897.1 672 71.9
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 3.2e-258 895.2 692 67.3
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 9.2e-258 893.6 689 66.5
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 9.2e-258 893.6 722 65.5
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.2e-257 893.3 689 66.8
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.0e-256 890.2 693 68.0
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 2.3e-256 889.0 686 67.2
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.3e-256 889.0 689 66.0
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 2.3e-256 889.0 803 60.5
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 8.6e-256 887.1 698 66.5
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 1.9e-255 885.9 687 66.5
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.3e-255 884.8 689 65.9
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.6e-254 882.9 689 66.3
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 8.1e-254 880.6 690 66.7
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 3.1e-253 878.6 691 66.9
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 8.9e-253 877.1 694 64.4
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 9.9e-252 873.6 691 67.4
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 4.2e-250 868.2 687 65.6
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 7.1e-250 867.5 686 66.8
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 9.2e-250 867.1 688 64.8
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 9.2e-250 867.1 675 66.4
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 1.2e-249 866.7 689 64.4
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 2.1e-249 865.9 687 65.5
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 1.0e-248 863.6 689 65.9
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.0e-248 863.6 644 68.3
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.7e-246 854.7 685 64.1
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.8e-245 852.8 688 65.8
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 9.0e-245 850.5 689 64.6
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.2e-244 850.1 707 63.8
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 2.0e-244 849.4 685 65.0
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 2.6e-244 849.0 685 64.8
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.3e-243 846.7 707 64.2
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 8.4e-243 844.0 679 65.1
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.4e-242 842.4 699 63.2
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 3.2e-242 842.0 672 65.2
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-241 839.7 699 63.1
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 2.3e-240 835.9 625 70.2
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.9e-240 835.1 740 61.6
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 8.7e-240 833.9 693 62.2
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.3e-239 832.0 694 63.0
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 9.6e-239 830.5 690 62.5
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.1e-237 827.0 684 63.5
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.1e-237 825.5 650 68.6
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 6.9e-237 824.3 685 61.5
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 2.0e-236 822.8 677 63.8
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 1.3e-235 820.1 691 61.5
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 2.2e-235 819.3 646 65.6
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 4.2e-234 815.1 685 61.3
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 1.6e-233 813.1 663 64.7
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 2.1e-233 812.8 685 61.6
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 2.1e-233 812.8 613 69.0
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.7e-233 812.4 691 60.8
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 1.3e-232 810.1 691 61.2
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.1e-231 807.0 643 66.4
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 6.2e-230 801.2 691 60.5
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 6.2e-230 801.2 691 60.5
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 2.6e-228 795.8 689 60.8
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 4.5e-228 795.0 643 63.1
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 5.8e-228 794.7 685 60.7
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 9.9e-228 793.9 726 58.1
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 3.2e-226 788.9 694 62.0
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 3.2e-226 788.9 693 60.3
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 5.5e-226 788.1 714 58.4
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 3.5e-225 785.4 708 58.9
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 6.0e-225 784.6 691 59.6
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 2.3e-224 782.7 691 58.8
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 8.7e-224 780.8 693 59.9
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 6.2e-222 774.6 702 59.0
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 1.8e-221 773.1 704 58.9
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 2.0e-220 769.6 691 57.9
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 1.1e-218 763.8 645 61.4
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 1.1e-218 763.8 653 60.2
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 1.4e-218 763.5 687 57.6
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 2.7e-217 759.2 687 57.9
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 3.5e-217 758.8 653 59.7
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 6.7e-216 754.6 650 59.5
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.5e-215 752.7 685 57.8
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 3.3e-215 752.3 685 59.3
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 1.3e-214 750.4 704 58.0
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.6e-214 750.0 685 59.0
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 2.2e-214 749.6 615 63.4
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 5.3e-213 745.0 622 62.7
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 5.0e-211 738.4 688 57.4
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 4.2e-210 735.3 657 58.9
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 1.0e-208 730.7 655 58.6
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 1.7e-206 723.4 652 58.1
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 2.8e-206 722.6 663 57.8
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 2.8e-206 722.6 663 57.8
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 4.1e-205 718.8 689 58.3
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 5.3e-197 691.8 733 52.8
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 2.5e-186 656.4 742 50.5
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 9.4e-186 654.4 502 69.1
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 2.2e-182 643.3 690 52.8
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 1.6e-169 600.5 536 57.1
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 3.7e-166 589.3 550 58.7
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.2e-149 533.1 563 54.4
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 7.6e-143 511.9 692 42.5
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 4.6e-132 476.1 432 59.5
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 2.4e-125 453.8 356 66.9
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.5e-117 426.0 320 69.7
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.6e-105 387.9 361 56.0
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.9e-101 374.4 379 57.5
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 2.7e-100 370.5 426 49.8
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 5.7e-98 362.8 307 59.9
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.0e-94 352.1 322 59.6
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 1.7e-94 351.3 529 42.3
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 1.2e-92 345.1 306 59.5
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 2.0e-79 301.2 424 43.9
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 5.0e-70 270.0 309 52.8
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 6.1e-68 263.1 384 45.1
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 5.7e-66 256.5 644 31.1
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.5e-58 229.6 263 51.3
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.7e-57 227.3 156 76.9
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 4.1e-56 223.8 297 46.1
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.4e-50 204.1 649 28.2
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 6.6e-46 189.9 225 50.2
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 8.0e-44 183.0 187 54.0
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 6.6e-38 163.3 195 50.3
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 8.6e-38 162.9 193 47.2
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.6e-37 160.2 162 56.2
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 8.1e-36 156.4 118 63.6
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 8.3e-33 146.4 135 57.0
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.5e-29 134.8 194 42.8
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 1.2e-28 132.5 96 67.7
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.1e-28 129.8 88 70.5
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-23 115.5 79 72.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-23 114.4 80 70.0
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 8.6e-22 109.8 140 47.1
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 5.2e-19 100.5 220 35.0
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 3.8e-17 94.4 67 71.6
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 6.4e-17 93.6 163 36.8
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 1.9e-16 92.0 86 59.3
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 9.3e-16 89.7 105 47.6
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 3.9e-14 84.3 115 39.1
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.1e-12 78.6 118 43.2
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 4.8e-12 77.4 177 32.8
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 4.5e-10 70.9 48 72.9


User provided reference genes

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