Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 0.0e+00 1350.9 715 100.0
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 0.0e+00 1135.6 688 83.9
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 0.0e+00 1082.0 687 82.2
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.0e-307 1059.7 681 83.1
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.1e-224 783.9 712 60.1
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.7e-220 769.2 637 63.4
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 7.7e-215 751.1 708 61.0
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 2.9e-214 749.2 703 58.7
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 5.0e-214 748.4 728 57.6
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 1.8e-211 740.0 631 61.0
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.1e-210 737.3 533 68.3
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 2.8e-209 732.6 692 56.2
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 4.8e-209 731.9 638 60.3
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.6e-207 726.1 535 67.5
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 4.5e-207 725.3 628 59.9
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 3.2e-205 719.2 576 62.5
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 3.6e-204 715.7 562 63.5
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 3.0e-203 712.6 542 64.8
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.3e-201 707.2 616 60.7
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 2.2e-201 706.4 525 64.6
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 6.3e-201 704.9 523 65.8
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.4e-200 703.7 633 60.0
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 1.1e-197 694.1 697 57.5
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.5e-197 693.7 712 55.1
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.9e-197 693.3 634 58.8
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 2.5e-197 693.0 628 59.9
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 3.6e-196 689.1 545 62.6
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 8.0e-196 688.0 627 57.6
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.3e-195 686.4 540 63.3
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 6.7e-195 684.9 641 56.5
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 6.7e-195 684.9 531 63.7
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 1.5e-194 683.7 624 57.2
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 2.0e-194 683.3 518 64.3
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 5.7e-194 681.8 531 62.9
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 9.7e-194 681.0 481 68.2
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.4e-192 677.2 719 54.1
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 5.3e-192 675.2 533 62.3
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 7.0e-192 674.9 686 53.9
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.6e-191 673.7 632 56.8
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 2.9e-190 669.5 635 56.7
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 8.5e-190 667.9 565 58.8
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.1e-189 667.5 703 54.2
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.5e-189 667.2 529 60.1
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 2.5e-189 666.4 692 54.3
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 5.5e-189 665.2 530 61.9
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 7.2e-189 664.8 640 55.9
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 2.1e-188 663.3 715 53.6
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.7e-188 662.9 533 61.9
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.4e-187 660.6 634 55.5
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 5.2e-187 658.7 692 52.3
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 2.0e-186 656.8 526 62.0
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 1.7e-185 653.7 572 60.5
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 2.2e-185 653.3 662 54.1
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 2.8e-185 652.9 631 54.2
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 3.7e-185 652.5 715 50.6
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 2.4e-184 649.8 640 53.8
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.1e-184 649.4 540 58.9
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 7.0e-184 648.3 599 57.4
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.6e-183 647.1 723 52.1
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.6e-183 647.1 633 54.7
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 7.7e-183 644.8 708 51.6
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 8.6e-182 641.3 642 54.2
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 2.5e-181 639.8 594 56.7
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 2.1e-180 636.7 636 54.9
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 1.8e-179 633.6 597 56.8
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 4.0e-179 632.5 358 87.2
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 5.2e-179 632.1 621 53.6
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.2e-178 630.9 579 57.7
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 2.2e-177 626.7 592 56.9
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 3.7e-177 625.9 636 52.8
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 8.3e-177 624.8 528 59.7
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 8.3e-177 624.8 610 54.9
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 6.6e-174 615.1 646 52.2
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 3.0e-171 606.3 605 54.2
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.2e-170 604.4 631 52.3
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 2.0e-170 603.6 355 96.3
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 2.2e-169 600.1 999 41.0
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 2.0e-167 593.6 597 54.4
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 3.5e-167 592.8 576 55.6
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 7.8e-167 591.7 670 50.6
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.0e-166 591.3 618 51.3
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 1.7e-166 590.5 313 93.0
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 9.5e-165 584.7 623 51.8
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 4.7e-164 582.4 612 51.3
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 4.7e-164 582.4 685 52.1
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.0e-159 567.0 533 55.0
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.2e-156 557.8 533 53.7
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.1e-155 554.7 486 57.6
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 3.9e-150 536.2 637 49.0
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 1.1e-147 528.1 567 50.4
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 8.9e-147 525.0 526 54.0
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 9.9e-146 521.5 577 48.7
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 2.4e-144 516.9 593 48.6
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 3.5e-143 513.1 550 50.4
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.2e-138 498.0 653 42.6
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 1.5e-138 497.7 695 46.0
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.3e-137 494.6 338 69.5
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.9e-136 490.7 615 48.3
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.4e-136 490.3 606 44.7
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 3.2e-136 490.0 515 51.3
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 1.2e-135 488.0 396 62.4
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.0e-134 485.0 540 48.1
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.8e-121 439.9 553 49.0
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 2.4e-120 437.2 314 66.9
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 7.1e-120 435.6 317 66.6
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 7.4e-117 425.6 577 42.8
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.3e-112 408.7 329 59.9
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 4.8e-100 369.8 454 50.7
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 1.8e-99 367.9 483 44.1
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 8.5e-97 359.0 351 53.6
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 6.1e-95 352.8 308 64.3
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.7e-94 349.4 495 45.7
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 3.3e-93 347.1 224 69.6
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 3.7e-92 343.6 359 50.1
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 9.4e-88 328.9 362 45.0
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 2.2e-84 317.8 444 39.6
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 8.8e-78 295.8 300 52.3
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 4.5e-74 283.5 293 52.9
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.8e-73 280.4 420 38.3
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.2e-69 268.9 505 38.4
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.5e-64 250.0 154 75.3
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 4.9e-60 236.9 508 31.3
PGSC0003DMG400008511 Solanum tuberosum HOM05D000751 ORTHO05D005618 6.6e-57 226.5 185 87.0
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 1.8e-54 218.4 198 57.1
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 7.5e-53 213.0 282 46.8
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.9e-51 208.4 195 55.9
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.6e-50 205.3 246 44.7
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 3.1e-46 191.0 313 40.9
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 5.4e-43 180.3 242 43.0
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 8.1e-39 166.4 289 39.1
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 1.2e-37 162.5 300 39.7
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.1e-35 156.0 150 50.7
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 5.1e-33 147.1 91 74.7
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.2e-31 142.5 78 82.1
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 3.6e-31 141.0 80 82.5
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 1.5e-29 135.6 291 32.6
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 2.9e-28 131.3 305 34.4
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.4e-27 129.0 85 64.7
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.1e-26 125.2 73 74.0
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.8e-23 114.8 86 66.3
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 5.3e-22 110.5 225 38.7
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.7e-20 105.5 135 45.2
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.4e-19 102.4 218 35.8
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 9.3e-19 99.8 90 57.8
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.3e-16 90.9 90 56.7
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.8e-15 88.2 79 58.2
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 3.8e-12 77.8 50 76.0
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 2.8e-07 61.6 37 70.3
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 4.0e-06 57.8 79 40.5


User provided reference genes

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