Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 2.4e-109 399.8 398 100.0
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 2.7e-108 396.4 398 99.2
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 1.3e-107 394.0 398 98.0
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 7.1e-85 318.5 398 82.4
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 7.6e-79 298.5 348 63.5
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 4.3e-74 282.7 398 56.8
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 1.1e-72 278.1 398 58.3
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 6.9e-72 275.4 394 80.5
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 4.2e-69 266.2 397 58.2
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 7.1e-69 265.4 398 74.6
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 5.1e-67 259.2 398 74.1
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 6.6e-67 258.8 398 66.6
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 8.7e-67 258.5 398 73.9
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 1.5e-66 257.7 398 79.9
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 1.5e-66 257.7 395 45.8
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 1.9e-66 257.3 399 73.2
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 1.9e-66 257.3 400 73.5
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 4.3e-66 256.1 387 50.4
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 9.6e-66 255.0 394 79.9
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 1.6e-65 254.2 398 73.4
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 1.1e-64 251.5 400 78.0
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 1.4e-64 251.1 392 73.2
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 1.3e-62 244.6 396 72.5
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 1.1e-61 241.5 395 44.1
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 1.9e-61 240.7 400 76.8
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 4.6e-60 236.1 404 60.9
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 6.0e-60 235.7 395 43.8
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 7.9e-60 235.3 398 70.9
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 2.3e-59 233.8 397 75.6
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 6.7e-59 232.3 400 53.2
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 1.5e-58 231.1 399 69.9
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 2.5e-58 230.3 400 58.5
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 3.3e-58 229.9 405 62.7
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 5.6e-58 229.2 390 64.4
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 7.4e-58 228.8 399 64.7
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 2.8e-57 226.9 400 54.5
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 3.7e-57 226.5 388 72.2
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 8.1e-57 225.3 279 52.3
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 5.3e-56 222.6 398 44.0
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 6.9e-56 222.2 409 51.3
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 9.0e-56 221.9 409 60.4
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 9.0e-56 221.9 397 71.3
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 2.6e-55 220.3 385 67.3
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 2.6e-55 220.3 423 59.6
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 3.4e-55 219.9 401 69.6
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 5.8e-55 219.2 388 70.6
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.8e-55 219.2 388 70.6
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.8e-55 219.2 388 70.6
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 5.8e-55 219.2 398 43.5
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 5.8e-55 219.2 394 71.6
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.7e-54 217.6 389 70.2
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 2.2e-54 217.2 423 45.9
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 6.5e-54 215.7 398 71.9
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 8.4e-54 215.3 402 65.4
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 8.4e-54 215.3 343 77.0
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 1.1e-53 214.9 397 40.6
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 1.2e-52 211.5 398 47.0
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 2.1e-52 210.7 386 74.6
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 3.9e-51 206.5 383 49.9
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 5.1e-51 206.1 390 60.8
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 5.1e-51 206.1 329 48.9
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 2.5e-50 203.8 409 59.4
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 2.5e-50 203.8 398 68.1
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 4.3e-50 203.0 390 60.8
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 7.4e-50 202.2 398 71.6
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 1.3e-49 201.4 398 59.5
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 3.7e-49 199.9 369 34.1
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 8.2e-49 198.7 392 67.3
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.1e-48 198.4 421 65.3
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 4.1e-48 196.4 391 68.0
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.3e-48 196.1 423 57.2
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 5.3e-48 196.1 401 36.7
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 5.3e-48 196.1 406 72.2
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 6.9e-48 195.7 389 68.1
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 6.9e-48 195.7 406 71.4
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 5.8e-47 192.6 398 59.0
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 5.8e-47 192.6 403 58.8
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 7.6e-47 192.2 389 69.9
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 1.0e-46 191.8 391 41.9
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.1e-45 188.3 399 59.4
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.1e-45 188.3 399 59.4
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 2.5e-45 187.2 390 67.2
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 5.5e-45 186.0 366 42.1
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 7.2e-45 185.7 412 55.8
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 7.2e-45 185.7 395 40.5
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 9.3e-45 185.3 395 40.5
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 2.1e-44 184.1 401 58.6
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 2.7e-44 183.7 397 59.4
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 2.7e-44 183.7 343 65.9
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 6.1e-44 182.6 390 66.7
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 1.0e-43 181.8 388 67.3
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 1.3e-43 181.4 399 57.6
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 1.8e-43 181.0 386 59.6
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 2.3e-43 180.6 398 57.8
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.9e-42 177.6 275 47.6
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 2.2e-41 174.1 398 31.7
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 2.8e-41 173.7 398 31.9
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 4.8e-41 172.9 388 58.5
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 4.8e-41 172.9 339 71.4
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 6.3e-41 172.6 345 71.0
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 8.2e-41 172.2 412 36.2
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 8.2e-41 172.2 400 47.0
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 1.8e-40 171.0 390 56.2
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 9.0e-40 168.7 341 72.7
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 9.0e-40 168.7 392 57.7
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 4.5e-39 166.4 400 60.8
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 1.7e-38 164.5 347 40.3
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 1.7e-38 164.5 394 55.1
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.7e-38 164.5 396 36.4
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 2.9e-38 163.7 411 60.3
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 3.8e-38 163.3 268 37.7
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 3.8e-38 163.3 404 50.0
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 1.1e-37 161.8 337 43.9
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 1.9e-37 161.0 341 66.3
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 7.2e-37 159.1 384 56.0
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 9.4e-37 158.7 428 58.6
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 1.6e-36 157.9 442 53.2
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 1.6e-36 157.9 390 47.9
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.1e-36 157.5 406 53.4
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 2.3e-35 154.1 405 39.5
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 6.7e-35 152.5 403 32.5
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 1.1e-34 151.8 111 67.6
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.5e-34 151.4 409 41.6
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 3.3e-34 150.2 400 63.0
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 9.7e-34 148.7 405 29.6
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 1.4e-32 144.8 390 57.4
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 5.3e-32 142.9 121 60.3
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 9.1e-32 142.1 110 65.5
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 1.2e-31 141.7 280 70.0
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 2.6e-31 140.6 392 28.8
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 2.9e-30 137.1 117 65.0
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 2.9e-30 137.1 174 44.3
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 2.9e-30 137.1 271 72.7
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 3.8e-30 136.7 125 58.4
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 5.0e-30 136.3 380 29.5
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 5.0e-30 136.3 398 33.4
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 5.0e-30 136.3 402 57.0
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 8.5e-30 135.6 119 58.8
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 1.9e-29 134.4 108 63.0
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.5e-29 134.0 118 54.2
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 9.4e-29 132.1 113 59.3
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 1.6e-28 131.3 495 50.1
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 3.6e-28 130.2 115 55.7
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 1.8e-27 127.9 400 28.8
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 2.3e-27 127.5 389 53.2
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 6.7e-27 125.9 344 58.4
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 1.5e-26 124.8 402 52.2
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.2e-25 120.9 398 26.9
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 5.9e-23 112.8 383 27.9
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 1.3e-22 111.7 213 35.7
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 5.0e-22 109.8 115 51.3
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 3.2e-21 107.1 344 27.0
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 6.1e-20 102.8 330 26.1
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 8.8e-19 99.0 62 72.6
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 4.4e-18 96.7 114 53.5
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.2e-17 94.4 342 24.3
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 2.4e-16 90.9 72 62.5
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 4.5e-15 86.7 406 26.8
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 5.0e-14 83.2 114 43.9
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 8.5e-14 82.4 366 23.8
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 6.1e-12 76.3 58 60.3
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 8.0e-12 75.9 52 63.5
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 8.0e-12 75.9 98 41.8
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 4.0e-11 73.6 52 61.5
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 2.6e-10 70.9 144 31.2
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 4.4e-10 70.1 90 42.2
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 1.3e-09 68.6 94 39.4
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 2.2e-09 67.8 40 72.5
CSS0010217 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 6.3e-09 66.2 39 79.5
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 7.7e-07 59.3 369 35.2
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 8.5e-06 55.8 96 43.8


User provided reference genes

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