Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 0.0e+00 2025.4 1058 100.0
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 0.0e+00 2008.4 1058 99.1
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 0.0e+00 1856.3 1058 91.9
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 0.0e+00 1727.6 1061 86.1
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 0.0e+00 1697.2 1059 85.3
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 0.0e+00 1659.0 1049 83.7
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1117.4 1107 56.7
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1108.2 1095 57.4
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 0.0e+00 1094.7 1074 57.2
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 7.2e-312 1074.7 1089 54.5
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 1.9e-307 1059.3 1112 54.5
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 5.7e-307 1057.7 1071 55.6
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 8.5e-303 1043.9 1095 54.2
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.2e-301 1040.0 1071 55.3
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 3.0e-300 1035.4 1077 55.9
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 2.2e-298 1029.2 1091 53.8
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 2.8e-298 1028.9 1078 53.3
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 8.2e-298 1027.3 1092 53.3
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 1.8e-297 1026.2 1087 52.2
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 1.8e-297 1026.2 1104 53.6
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 2.4e-297 1025.8 1085 53.5
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 1.0e-295 1020.4 1202 50.1
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 4.2e-294 1015.0 1084 52.2
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 5.5e-294 1014.6 1091 53.3
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 1.3e-290 1003.4 1082 52.3
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.7e-290 1001.9 1075 52.7
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 4.8e-290 1001.5 1084 51.3
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 1.3e-287 993.4 1083 52.2
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 2.9e-287 992.3 1108 51.4
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 4.2e-286 988.4 1089 52.0
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.3e-283 978.8 1086 51.9
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 3.1e-281 972.2 1094 51.3
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.5e-278 963.4 1023 53.3
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 2.5e-278 962.6 1108 50.5
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 1.2e-277 960.3 1096 50.5
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 3.4e-275 952.2 1120 50.9
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.4e-275 951.8 1083 50.6
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 5.7e-275 951.4 1118 49.9
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 1.7e-274 949.9 1079 50.4
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 8.5e-271 937.6 1081 49.8
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 1.5e-270 936.8 1052 50.6
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 4.2e-270 935.3 1094 49.4
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.2e-266 922.9 1085 49.8
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 3.7e-266 922.2 999 52.8
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 2.7e-264 916.0 1071 49.2
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 1.7e-263 913.3 1049 49.4
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 3.0e-260 902.5 1088 48.7
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 5.2e-260 901.7 1088 48.0
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 9.8e-259 897.5 1067 49.3
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 6.4e-258 894.8 1029 50.4
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 3.2e-257 892.5 1103 47.4
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 9.2e-257 891.0 1092 48.4
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 1.1e-254 884.0 1076 48.8
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 3.3e-254 882.5 1072 48.9
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 4.4e-251 872.1 842 57.2
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.2e-250 869.8 1079 47.5
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 3.2e-249 865.9 1090 47.5
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 1.6e-248 863.6 984 48.7
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 2.3e-247 859.8 1073 47.3
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 2.3e-247 859.8 1073 47.3
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 5.0e-247 858.6 1070 48.6
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 1.8e-244 850.1 1039 48.3
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 3.1e-244 849.4 1073 46.9
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 8.9e-244 847.8 1190 45.3
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.2e-243 847.4 959 50.7
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 5.8e-243 845.1 1077 46.6
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.3e-242 841.3 1144 45.9
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.4e-241 840.5 1083 46.1
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 1.1e-238 830.9 1036 48.6
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 1.5e-235 820.5 1154 44.3
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.5e-230 803.9 902 52.5
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.5e-219 767.3 1034 44.3
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 1.6e-216 757.3 984 46.6
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 4.0e-212 742.7 834 50.8
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 2.7e-208 729.9 1071 43.5
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 4.5e-203 712.6 1070 43.5
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 1.1e-188 664.8 727 50.2
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 2.5e-185 653.7 745 50.6
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 4.2e-185 652.9 961 41.1
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 5.0e-178 629.4 1100 38.6
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 6.7e-175 619.0 838 45.5
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 1.0e-170 605.1 662 50.6
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 1.3e-165 588.2 994 38.3
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.4e-158 563.5 898 41.3
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 1.8e-156 557.8 960 38.0
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.2e-144 518.5 498 56.2
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 1.6e-139 501.5 584 51.2
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.6e-139 501.5 755 40.8
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 1.3e-138 498.4 572 48.1
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 7.5e-134 482.6 675 41.8
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.1e-129 468.8 493 53.5
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.2e-126 458.8 482 53.1
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 1.6e-120 438.3 579 45.3
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 1.9e-100 371.7 388 54.4
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 1.0e-98 365.9 770 34.5
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 3.8e-93 347.4 395 50.6
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 6.4e-93 346.7 394 51.0
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 9.3e-92 342.8 494 43.9
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 2.0e-78 298.5 383 46.2
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 1.3e-74 285.8 1065 26.4
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 1.3e-72 279.3 263 60.1
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 3.6e-67 261.2 923 27.3
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.9e-58 231.1 175 72.0
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.0e-54 218.8 258 49.6
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.7e-51 207.6 573 32.3
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 9.7e-49 199.9 366 36.9
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 8.2e-48 196.8 255 45.5
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 6.5e-45 187.2 168 59.5
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 1.1e-44 186.4 167 59.3
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 2.1e-43 182.2 307 40.1
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.4e-39 168.7 231 46.8
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.5e-38 164.5 241 44.0
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 3.4e-33 148.3 1138 21.9
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 3.1e-31 141.7 240 38.3
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.1e-31 141.4 123 60.2
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.5e-28 132.9 132 51.5
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 3.3e-28 131.7 170 42.9
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 5.6e-28 131.0 93 72.0
Nitab4.5_0000491g0070 Nicotiana tabacum HOM05D000087 ORTHO05D005735 6.1e-27 127.5 86 77.9
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 6.4e-24 117.5 120 60.0
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.6e-22 112.8 130 46.9
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 2.3e-21 109.0 71 83.1
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.6e-19 102.8 176 34.7
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.5e-17 96.3 98 48.0
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.7e-16 92.8 88 53.4
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.2e-16 92.4 64 67.2
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 4.6e-14 84.7 88 47.7
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 7.8e-14 84.0 142 35.9
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 7.8e-14 84.0 93 45.2
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 3.0e-13 82.0 104 43.3
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 5.0e-13 81.3 94 51.1
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.9e-12 79.3 80 50.0
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.3e-12 78.2 61 60.7
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 4.3e-12 78.2 97 47.4
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 5.6e-12 77.8 97 46.4
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 1.2e-11 76.6 95 44.2
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 4.7e-11 74.7 135 34.8
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 1.4e-10 73.2 73 63.0
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.3e-10 72.4 121 42.1
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.3e-10 72.4 68 60.3
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.0e-09 69.3 75 52.0
SalBow7G0393 Salvia bowleyana HOM05D022560 ORTHO05D005735 3.5e-06 58.5 62 56.5


User provided reference genes

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