Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g004170 Solanum pennellii HOM05D002758 ORTHO05D002885 4.7e-71 271.2 146 100.0
Solyc07g008280.4 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.7e-68 262.7 146 97.3
PGSC0003DMG400019894 Solanum tuberosum HOM05D002758 ORTHO05D002885 2.0e-61 239.2 151 88.1
CAN.G403.8 Capsicum annuum HOM05D002758 ORTHO05D002885 3.7e-55 218.4 147 81.6
Nitab4.5_0000028g0360 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.3e-41 173.3 147 72.8
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 2.7e-34 149.1 149 67.1
Nitab4.5_0006661g0030 Nicotiana tabacum HOM05D002758 ORTHO05D002885 5.9e-29 131.3 95 78.9
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 3.6e-26 122.1 149 56.4
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 1.7e-23 113.2 150 56.0
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.7e-23 112.1 147 52.4
Cc06_g08410 Coffea canephora HOM05D002758 ORTHO05D002885 5.3e-22 108.2 148 52.0
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 5.3e-22 108.2 148 54.1
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 4.5e-21 105.1 152 48.7
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 1.0e-20 104.0 142 54.9
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 1.7e-20 103.2 147 51.0
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 2.9e-20 102.4 149 49.0
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 1.4e-19 100.1 144 53.5
HanXRQChr10g0315561 Helianthus annuus HOM05D002758 ORTHO05D002885 1.9e-19 99.8 147 45.6
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 2.5e-19 99.4 152 50.7
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.6e-18 96.7 147 47.6
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 1.6e-18 96.7 153 51.0
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.6e-18 96.7 151 49.7
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 1.6e-18 96.7 149 52.3
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.7e-18 95.9 150 46.0
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 3.6e-18 95.5 158 46.2
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 4.7e-18 95.1 147 47.6
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 6.1e-18 94.7 155 47.1
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.0e-17 94.0 149 49.0
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 1.0e-17 94.0 155 47.1
DCAR_014886 Daucus carota HOM05D002758 ORTHO05D002885 2.3e-17 92.8 142 49.3
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 2.3e-17 92.8 148 48.6
Ca_21675_v3 Cicer arietinum L. HOM05D002758 ORTHO05D002885 6.7e-17 91.3 160 45.0
GSVIVG01015544001 Vitis vinifera HOM05D002758 ORTHO05D002885 1.5e-16 90.1 157 46.5
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 2.0e-16 89.7 156 46.2
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 2.6e-16 89.4 149 47.0
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 3.3e-16 89.0 152 45.4
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 4.4e-16 88.6 155 46.5
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 5.7e-16 88.2 155 47.1
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 5.7e-16 88.2 152 43.4
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 7.4e-16 87.8 143 48.3
ClCG06G011200 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.3e-15 87.0 147 44.2
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.3e-15 87.0 147 46.3
HanXRQChr12g0356261 Helianthus annuus HOM05D002758 ORTHO05D002885 1.3e-15 87.0 143 42.0
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.3e-15 87.0 151 46.4
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 3.7e-15 85.5 152 46.7
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 4.8e-15 85.1 154 50.6
ECA234G1831 Erigeron canadensis HOM05D002758 ORTHO05D002885 4.8e-15 85.1 145 42.8
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 4.8e-15 85.1 159 44.0
CSS0022572 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 6.3e-15 84.7 145 46.9
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 8.2e-15 84.3 154 44.8
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.1e-14 84.0 150 48.7
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 1.1e-14 84.0 150 46.0
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 1.1e-14 84.0 145 42.8
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 3.1e-14 82.4 150 46.0
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 3.1e-14 82.4 148 48.0
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 3.1e-14 82.4 150 48.7
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.1e-14 82.4 152 46.1
QL02p088621 Quercus lobata HOM05D002758 ORTHO05D002885 3.1e-14 82.4 152 41.4
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 4.1e-14 82.0 152 45.4
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 5.3e-14 81.6 149 45.0
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 5.3e-14 81.6 151 43.7
Phvul.003G165200 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 5.3e-14 81.6 151 43.7
MSTRG.10674 Avicennia marina HOM05D002758 ORTHO05D002885 7.0e-14 81.3 151 45.0
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.2e-13 80.5 150 40.7
Eucgr.C01181 Eucalyptus grandis HOM05D002758 ORTHO05D002885 1.2e-13 80.5 148 43.9
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 1.2e-13 80.5 150 45.3
HanXRQChr04g0096561 Helianthus annuus HOM05D002758 ORTHO05D002885 1.6e-13 80.1 151 43.0
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 1.6e-13 80.1 151 43.0
TWI32G0299 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.6e-13 80.1 147 46.9
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 2.0e-13 79.7 150 43.3
DCAR_020919 Daucus carota HOM05D002758 ORTHO05D002885 2.0e-13 79.7 149 45.6
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 2.0e-13 79.7 150 42.7
ECA240G3055 Erigeron canadensis HOM05D002758 ORTHO05D002885 2.6e-13 79.3 135 45.2
TPR.G26478 Trifolium pratense HOM05D002758 ORTHO05D002885 2.6e-13 79.3 161 43.5
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 3.5e-13 79.0 145 46.9
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.5e-13 79.0 148 44.6
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.5e-13 79.0 157 42.0
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.5e-13 79.0 148 44.6
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.5e-13 79.0 148 44.6
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 3.5e-13 79.0 150 46.7
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 3.5e-13 79.0 151 44.4
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 4.5e-13 78.6 164 37.8
Glyma.17G114300 Glycine max HOM05D002758 ORTHO05D002885 5.9e-13 78.2 153 44.4
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 5.9e-13 78.2 152 42.8
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 7.7e-13 77.8 142 41.5
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.0e-12 77.4 151 43.0
MELO3C010338.2 Cucumis melo HOM05D002758 ORTHO05D002885 1.7e-12 76.6 149 40.3
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 1.7e-12 76.6 151 42.4
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 1.7e-12 76.6 153 43.8
CiPaw.03G244800 Carya illinoinensis HOM05D002758 ORTHO05D002885 2.2e-12 76.3 159 41.5
CiPaw.04G171600 Carya illinoinensis HOM05D002758 ORTHO05D002885 2.2e-12 76.3 148 42.6
Manes.14G132900 Manihot esculenta HOM05D002758 ORTHO05D002885 2.2e-12 76.3 144 45.1
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.8e-12 75.5 141 42.6
HanXRQChr05g0138371 Helianthus annuus HOM05D002758 ORTHO05D002885 3.8e-12 75.5 152 40.8
HanXRQChr05g0140201 Helianthus annuus HOM05D002758 ORTHO05D002885 3.8e-12 75.5 152 40.8
Sed0025517 Sechium edule HOM05D002758 ORTHO05D002885 5.0e-12 75.1 153 40.5
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 6.5e-12 74.7 155 41.3
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 6.5e-12 74.7 149 41.6
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 6.5e-12 74.7 153 43.8
CsaV3_1G030210 Cucumis sativus L. HOM05D002758 ORTHO05D002885 1.1e-11 73.9 148 38.5
Sc18g0000570 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.1e-11 73.9 156 42.9
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 1.1e-11 73.9 152 40.1
Haze_25567 Corylus avellana HOM05D002758 ORTHO05D002885 1.9e-11 73.2 157 40.8
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 1.9e-11 73.2 148 41.2
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 2.5e-11 72.8 146 39.7
Lsat_1_v5_gn_8_58521 Lactuca sativa HOM05D002758 ORTHO05D002885 3.2e-11 72.4 150 39.3
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.2e-11 72.4 147 42.2
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 4.2e-11 72.0 158 41.8
Cfa003385 Carpinus fangiana HOM05D002758 ORTHO05D002885 7.2e-11 71.2 152 41.4
HanXRQChr09g0241961 Helianthus annuus HOM05D002758 ORTHO05D002885 7.2e-11 71.2 147 38.1
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.4e-11 70.9 157 39.5
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 9.4e-11 70.9 150 43.3
PGR142G4319 Punica granatum HOM05D002758 ORTHO05D002885 9.4e-11 70.9 181 40.9
DCAR_017810 Daucus carota HOM05D002758 ORTHO05D002885 1.2e-10 70.5 135 40.7
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 1.6e-10 70.1 136 40.4
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 2.1e-10 69.7 141 40.4
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 2.1e-10 69.7 157 40.8
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 3.6e-10 68.9 150 40.7
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.6e-10 68.9 153 38.6
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.6e-10 68.9 153 38.6
Migut.K00449 Erythranthe guttata HOM05D002758 ORTHO05D002885 4.7e-10 68.6 153 41.2
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 4.7e-10 68.6 142 40.8
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 6.1e-10 68.2 157 40.1
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 8.0e-10 67.8 148 41.2
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 8.0e-10 67.8 149 43.0
Cpa.g.sc46.5 Carica papaya HOM05D002758 ORTHO05D002885 8.0e-10 67.8 186 37.6
THA.LOC104808985 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 8.0e-10 67.8 147 39.5
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.0e-09 67.4 153 37.9
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 1.0e-09 67.4 149 40.3
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.4e-09 67.0 157 38.9
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.4e-09 67.0 160 38.8
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.8e-09 66.6 155 40.0
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 3.0e-09 65.9 151 37.7
Glyma.13G166500 Glycine max HOM05D002758 ORTHO05D002885 3.0e-09 65.9 159 40.9
SGA_v2.0_scaffold5G02683 Striga asiatica HOM05D002758 ORTHO05D002885 5.2e-09 65.1 155 40.6
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 6.7e-09 64.7 146 39.0
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 1.2e-08 63.9 147 41.5
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.5e-08 63.5 142 35.2
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.5e-08 63.5 153 37.9
SGA_v2.0_scaffold37G14775 Striga asiatica HOM05D002758 ORTHO05D002885 1.5e-08 63.5 161 38.5
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 2.0e-08 63.2 152 39.5
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 2.6e-08 62.8 152 34.9
COL.COLO4_35114 Corchorus olitorius HOM05D002758 ORTHO05D002885 2.6e-08 62.8 144 39.6
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 2.6e-08 62.8 155 37.4
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 7.5e-08 61.2 146 34.2
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 7.5e-08 61.2 149 36.2
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 7.5e-08 61.2 145 42.8
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 9.7e-08 60.8 150 36.7
TWI63G1461 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 9.7e-08 60.8 143 40.6
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 1.3e-07 60.5 146 39.0
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 1.3e-07 60.5 140 37.1
Sc08g0006550 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.3e-07 60.5 147 39.5
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.2e-07 59.7 146 35.6
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 2.8e-07 59.3 144 38.9
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 2.8e-07 59.3 146 33.6
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.7e-07 58.9 155 35.5
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 4.8e-07 58.5 139 39.6
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.1e-06 57.4 140 37.1
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 1.1e-06 57.4 138 35.5
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.4e-06 57.0 137 32.8
Oeu045136.1 Olea europaea HOM05D002758 ORTHO05D002885 1.4e-06 57.0 83 43.4
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 2.4e-06 56.2 138 34.1
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 2.4e-06 56.2 150 40.0
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 2.4e-06 56.2 150 40.0
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 2.4e-06 56.2 154 37.7
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 2.4e-06 56.2 144 39.6
Atru.chr7.1142 Acer truncatum HOM05D002758 ORTHO05D002885 3.1e-06 55.8 94 50.0
Aqoxy7G02215 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 4.1e-06 55.5 143 37.8
CDE04G0331 Ceratophyllum demersum HOM05D002758 ORTHO05D002885 4.1e-06 55.5 140 35.7
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 5.3e-06 55.1 147 34.0
CANSAT78G2290 Cannabis sativa HOM05D002758 ORTHO05D002885 7.0e-06 54.7 99 47.5
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 7.0e-06 54.7 143 37.8
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 9.1e-06 54.3 138 39.1
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 9.1e-06 54.3 138 37.7


User provided reference genes

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