Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 4.6e-97 357.8 175 100.0
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 6.0e-97 357.5 175 99.4
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.1e-96 354.4 175 98.3
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.3e-91 339.7 174 92.5
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.2e-91 339.0 175 93.7
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 3.0e-88 328.6 175 88.6
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.1e-87 326.6 190 85.8
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 1.1e-87 326.6 175 87.4
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 1.5e-87 326.2 174 87.9
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 87.4
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 1.6e-86 322.8 175 86.3
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 2.8e-86 322.0 175 86.3
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 87.2
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 3.7e-86 321.6 175 86.9
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 6.3e-86 320.9 175 85.7
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 8.2e-86 320.5 173 86.7
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 87.2
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 85.7
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 85.7
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 1.4e-85 319.7 175 86.3
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.4e-85 319.7 175 84.6
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 1.8e-85 319.3 174 86.2
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.8e-85 319.3 175 85.7
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 2.4e-85 318.9 175 86.3
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 2.4e-85 318.9 172 86.6
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 2.4e-85 318.9 172 86.6
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 3.1e-85 318.5 175 85.7
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 3.1e-85 318.5 175 85.7
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 4.1e-85 318.2 172 86.6
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 85.7
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 85.1
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 86.3
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 6.9e-85 317.4 174 85.6
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 6.9e-85 317.4 172 86.0
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 9.0e-85 317.0 175 85.1
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 9.0e-85 317.0 172 85.5
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 9.0e-85 317.0 175 86.3
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.2e-84 316.6 172 86.6
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 1.2e-84 316.6 175 84.0
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.2e-84 316.6 175 84.6
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 3.4e-84 315.1 175 84.6
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 3.4e-84 315.1 175 86.3
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 4.5e-84 314.7 173 85.5
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 4.5e-84 314.7 172 85.5
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.0e-83 313.5 174 83.9
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.0e-83 313.5 174 84.5
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.3e-83 313.2 172 86.0
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 1.3e-83 313.2 175 85.1
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 1.7e-83 312.8 172 84.9
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.7e-83 312.8 174 85.1
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 1.7e-83 312.8 173 83.8
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 2.2e-83 312.4 173 85.0
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 2.2e-83 312.4 172 86.0
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 3.8e-83 311.6 173 85.0
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 3.8e-83 311.6 175 84.0
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 5.0e-83 311.2 174 84.5
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 6.5e-83 310.8 173 84.4
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 6.5e-83 310.8 175 83.4
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 6.5e-83 310.8 174 85.1
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.5e-83 310.8 174 85.1
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 8.5e-83 310.5 172 84.3
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 1.1e-82 310.1 175 83.4
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 84.9
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 84.9
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.1e-82 310.1 174 83.9
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 1.9e-82 309.3 173 83.8
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.5e-82 308.9 173 83.8
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 4.2e-82 308.1 173 83.8
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 4.2e-82 308.1 173 83.8
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.2e-82 308.1 174 84.5
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 4.2e-82 308.1 172 83.1
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 4.2e-82 308.1 171 84.8
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.5e-82 307.8 175 83.4
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 7.2e-82 307.4 172 84.3
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 7.2e-82 307.4 175 85.1
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.2e-81 306.6 172 83.1
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 2.1e-81 305.8 172 83.7
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 2.1e-81 305.8 172 83.7
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 2.7e-81 305.4 174 83.3
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 3.6e-81 305.1 175 81.7
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 4.6e-81 304.7 172 83.1
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.8e-80 302.8 171 81.9
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 2.3e-80 302.4 175 82.3
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 5.1e-80 301.2 181 80.1
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 1.5e-79 299.7 226 66.8
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.5e-79 299.7 174 81.6
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.5e-79 299.7 172 81.4
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 1.1e-77 293.5 159 86.8
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.8e-77 292.7 173 79.2
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 2.4e-77 292.4 173 79.8
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 3.1e-77 292.0 172 80.2
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 3.1e-77 292.0 172 80.2
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 3.1e-77 292.0 172 80.2
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 3.1e-77 292.0 172 80.2
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.1e-77 291.6 173 78.6
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 4.5e-76 288.1 172 79.7
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 5.9e-76 287.7 175 78.3
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 5.0e-75 284.6 167 79.0
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.2e-74 281.6 158 86.1
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 5.7e-71 271.2 151 88.1
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.0e-68 262.7 149 85.2
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 2.2e-67 259.2 172 73.8
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 1.1e-66 256.9 176 67.6
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 7.2e-66 254.2 174 66.1
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 3.6e-65 251.9 174 64.4
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 8.0e-65 250.8 174 64.9
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.1e-63 246.9 127 94.5
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 7.4e-63 244.2 138 85.5
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 2.0e-60 236.1 185 65.9
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.0e-59 233.8 136 83.1
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.7e-59 233.0 134 83.6
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.9e-59 232.3 130 82.3
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.9e-59 232.3 130 82.3
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 2.9e-59 232.3 126 88.1
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 3.2e-58 228.8 172 66.9
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 7.2e-58 227.6 127 82.7
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 4.7e-57 224.9 128 83.6
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 8.0e-57 224.2 176 62.5
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 4.0e-56 221.9 133 81.2
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 5.2e-56 221.5 130 80.8
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 7.5e-55 217.6 127 81.1
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 7.0e-53 211.1 129 77.5
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.7e-52 209.1 163 67.5
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.5e-50 203.4 128 78.9
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 1.9e-50 203.0 132 74.2
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 4.0e-48 195.3 147 70.1
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 8.3e-46 187.6 130 70.0
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 6.8e-40 167.9 131 66.4
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.9e-36 154.8 92 82.6
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.0e-35 154.1 96 78.1
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 8.6e-35 151.0 93 77.4
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.3e-34 149.1 89 84.3
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 5.6e-34 148.3 80 83.8
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.2e-33 144.8 103 71.8
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-32 142.9 92 78.3
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.1e-32 142.5 95 76.8
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.0e-32 142.1 90 78.9
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.9e-32 141.0 90 80.0
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.5e-31 140.2 88 73.9
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.0e-27 127.5 99 63.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.3e-27 127.1 80 76.2
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 3.9e-27 125.6 75 81.3
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.5e-26 120.9 77 79.2
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 2.1e-25 119.8 195 34.4
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.1e-24 117.5 67 76.1
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 3.2e-21 105.9 90 60.0
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 1.6e-20 103.6 57 82.5
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 2.4e-13 79.7 37 91.9


User provided reference genes

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