Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 1.1e-54 216.5 111 100.0
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 1.3e-52 209.5 111 96.4
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 1.7e-52 209.1 111 97.3
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 6.6e-49 197.2 109 93.6
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 7.1e-43 177.2 111 83.8
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 6.6e-41 170.6 109 81.7
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 3.1e-30 135.2 110 66.4
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 3.8e-28 128.3 95 71.6
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 8.4e-28 127.1 95 70.5
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 8.4e-28 127.1 95 70.5
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 1.1e-27 126.7 95 70.5
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 3.4e-21 105.1 98 59.2
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 8.4e-20 100.5 95 61.1
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 8.4e-20 100.5 96 59.4
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 1.1e-19 100.1 111 53.2
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 1.4e-19 99.8 96 59.4
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 4.2e-19 98.2 95 61.1
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 5.5e-19 97.8 106 55.7
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 6.0e-18 94.4 96 59.4
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 1.0e-17 93.6 100 56.0
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.3e-17 93.2 96 58.3
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 1.8e-17 92.8 102 56.9
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 2.3e-17 92.4 109 52.3
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 3.9e-17 91.7 109 55.0
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 3.9e-17 91.7 96 59.4
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 3.9e-17 91.7 96 59.4
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 3.9e-17 91.7 95 57.9
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 3.9e-17 91.7 95 54.7
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 5.1e-17 91.3 94 55.3
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 5.1e-17 91.3 94 59.6
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 5.1e-17 91.3 96 56.2
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 8.7e-17 90.5 97 52.6
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 1.1e-16 90.1 97 56.7
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 1.1e-16 90.1 97 55.7
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 1.1e-16 90.1 97 55.7
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 1.1e-16 90.1 97 55.7
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 1.1e-16 90.1 96 58.3
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.9e-16 89.4 95 53.7
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 3.3e-16 88.6 104 54.8
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 7.4e-16 87.4 95 56.8
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 9.7e-16 87.0 95 51.6
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 9.7e-16 87.0 109 48.6
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 9.7e-16 87.0 105 49.5
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 9.7e-16 87.0 98 56.1
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 9.7e-16 87.0 105 49.5
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.2e-15 85.9 95 53.7
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 2.8e-15 85.5 95 54.7
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 3.7e-15 85.1 94 52.1
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 3.7e-15 85.1 113 53.1
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 6.3e-15 84.3 96 54.2
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 6.3e-15 84.3 96 52.1
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 8.2e-15 84.0 94 52.1
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 8.2e-15 84.0 101 52.5
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 8.2e-15 84.0 106 50.0
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 1.1e-14 83.6 95 54.7
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 2.4e-14 82.4 98 54.1
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 2.4e-14 82.4 96 53.1
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 2.4e-14 82.4 96 53.1
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 2.4e-14 82.4 94 50.0
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 3.1e-14 82.0 96 52.1
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 3.1e-14 82.0 103 50.5
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 3.1e-14 82.0 103 50.5
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 4.1e-14 81.6 122 48.4
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 5.3e-14 81.3 97 52.6
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 5.3e-14 81.3 96 52.1
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 5.3e-14 81.3 95 49.5
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.2e-13 80.1 96 52.1
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 1.2e-13 80.1 95 50.5
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 1.5e-13 79.7 96 51.0
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 1.5e-13 79.7 94 48.9
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 2.6e-13 79.0 102 50.0
MELO3C010264.2 Cucumis melo HOM05D003638 ORTHO05D003202 5.9e-13 77.8 99 49.5
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 5.9e-13 77.8 94 55.3
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 7.6e-13 77.4 97 49.5
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.7e-12 76.3 93 51.6
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 3.8e-12 75.1 93 50.5
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 5.0e-12 74.7 95 48.4
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 5.0e-12 74.7 95 47.4
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 6.5e-12 74.3 106 45.3
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 1.4e-11 73.2 96 49.0
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 1.9e-11 72.8 91 51.6
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 3.2e-11 72.0 83 54.2
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 4.2e-11 71.6 98 44.9
Sed0026668 Sechium edule HOM05D003638 ORTHO05D003202 5.5e-11 71.2 99 51.5
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 9.4e-11 70.5 102 47.1
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 1.6e-10 69.7 102 45.1
Sc14g0000080 Simmondsia chinensis HOM05D003638 ORTHO05D003202 1.6e-10 69.7 105 48.6
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 1.6e-10 69.7 96 46.9
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 2.7e-10 68.9 109 45.0
CsaV3_1G028490 Cucumis sativus L. HOM05D003638 ORTHO05D003202 3.6e-10 68.6 94 50.0
SEGI_35833 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 3.6e-10 68.6 100 46.0
SEGI_39004 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 3.6e-10 68.6 100 46.0
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 4.6e-10 68.2 93 47.3
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 6.1e-10 67.8 98 45.9
Migut.K00380 Erythranthe guttata HOM05D003638 ORTHO05D003202 7.9e-10 67.4 116 44.0
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 1.0e-09 67.0 96 50.0
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.4e-09 66.6 95 49.5
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 3.0e-09 65.5 100 45.0
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 3.0e-09 65.5 106 46.2
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 3.9e-09 65.1 103 49.5
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 3.9e-09 65.1 102 45.1
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 3.9e-09 65.1 102 45.1
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 3.9e-09 65.1 102 45.1
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 3.9e-09 65.1 102 45.1
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 3.9e-09 65.1 102 45.1
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 3.9e-09 65.1 116 42.2
Glyma.17G105300 Glycine max HOM05D003638 ORTHO05D003202 6.7e-09 64.3 111 44.1
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 6.7e-09 64.3 103 44.7
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 8.8e-09 63.9 102 45.1
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 8.8e-09 63.9 102 45.1
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 8.8e-09 63.9 104 43.3
HanXRQChr12g0357031 Helianthus annuus HOM05D003638 ORTHO05D003202 8.8e-09 63.9 96 45.8
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 1.1e-08 63.5 94 42.6
TPR.G15775 Trifolium pratense HOM05D003638 ORTHO05D003202 1.1e-08 63.5 108 44.4
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 1.5e-08 63.2 90 47.8
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 1.9e-08 62.8 95 46.3
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 1.9e-08 62.8 104 40.4
MSTRG.6091 Avicennia marina HOM05D003638 ORTHO05D003202 1.9e-08 62.8 111 46.8
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 1.9e-08 62.8 93 45.2
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 2.5e-08 62.4 97 46.4
Medtr4g116480 Medicago truncatula HOM05D003638 ORTHO05D003202 2.5e-08 62.4 103 47.6
Phvul.003G174500 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 2.5e-08 62.4 100 41.0
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 3.3e-08 62.0 94 46.8
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 4.3e-08 61.6 107 43.9
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 4.3e-08 61.6 94 46.8
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 4.3e-08 61.6 94 46.8
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 4.3e-08 61.6 107 43.0
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 5.7e-08 61.2 94 46.8
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 5.7e-08 61.2 94 46.8
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 5.7e-08 61.2 98 46.9
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 5.7e-08 61.2 94 46.8
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 9.7e-08 60.5 117 40.2
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 1.3e-07 60.1 112 40.2
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 2.8e-07 58.9 94 45.7
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 2.8e-07 58.9 94 45.7
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 3.7e-07 58.5 116 40.5
Hund09319 Selenicereus undatus HOM05D003638 ORTHO05D003202 4.8e-07 58.2 96 45.8
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 1.1e-06 57.0 82 43.9
arahy.Tifrunner.gnm1.ann1.80FEVW Arachis hypogaea HOM05D003638 ORTHO05D003202 1.8e-06 56.2 104 44.2
arahy.Tifrunner.gnm1.ann1.V8YXJU Arachis hypogaea HOM05D003638 ORTHO05D003202 1.8e-06 56.2 107 40.2
arahy.Tifrunner.gnm1.ann1.Y03F6U Arachis hypogaea HOM05D003638 ORTHO05D003202 2.4e-06 55.8 103 40.8
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 2.4e-06 55.8 94 42.6
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 2.4e-06 55.8 97 43.3
ECA236G1572 Erigeron canadensis HOM05D003638 ORTHO05D003202 3.1e-06 55.5 94 43.6
Os02g0798200 Oryza sativa ssp. japonica HOM05D003638 ORTHO05D003202 3.1e-06 55.5 93 41.9
COL.COLO4_24107 Corchorus olitorius HOM05D003638 ORTHO05D003202 4.1e-06 55.1 52 55.8
Psat4g033360 Pisum sativum HOM05D003638 ORTHO05D003202 4.1e-06 55.1 89 47.2
Nn2g12242 Nelumbo nucifera HOM05D003638 ORTHO05D003202 5.3e-06 54.7 57 57.9
ECA234G1438 Erigeron canadensis HOM05D003638 ORTHO05D003202 6.9e-06 54.3 101 48.5
HanXRQChr05g0137971 Helianthus annuus HOM05D003638 ORTHO05D003202 6.9e-06 54.3 94 39.4


User provided reference genes

Program Settings