Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 2.0e-222 775.4 381 100.0
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 7.7e-222 773.5 381 99.7
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 8.8e-218 760.0 381 97.9
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 5.3e-207 724.2 381 92.9
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 2.3e-202 708.8 379 90.5
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 2.6e-201 705.3 379 90.5
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 7.0e-199 697.2 379 89.7
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 1.5e-172 609.8 381 76.6
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.7e-166 589.0 381 73.5
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.5e-166 588.6 381 72.2
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.5e-166 588.6 381 72.2
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.5e-166 588.6 381 73.0
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 2.3e-165 585.9 381 72.2
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 3.0e-165 585.5 381 73.0
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 1.1e-164 583.6 381 72.2
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 4.3e-164 581.6 375 74.4
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 9.5e-164 580.5 381 72.4
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 3.6e-163 578.6 381 73.0
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.4e-162 576.6 381 71.9
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.8e-162 576.2 381 72.2
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 6.8e-162 574.3 378 73.5
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.5e-161 573.2 380 70.3
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 2.0e-161 572.8 381 69.8
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 9.9e-161 570.5 381 73.0
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 1.7e-160 569.7 378 71.2
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 6.4e-160 567.8 381 71.4
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 4.2e-159 565.1 381 70.1
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 5.4e-159 564.7 377 71.6
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 2.7e-158 562.4 381 72.4
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 3.0e-157 558.9 382 71.5
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 1.5e-156 556.6 381 70.6
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.5e-156 556.6 354 74.6
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.5e-156 555.8 379 67.5
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 4.3e-156 555.1 377 68.7
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 9.6e-156 553.9 377 70.6
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 6.2e-155 551.2 375 68.3
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 6.2e-155 551.2 379 69.1
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 8.1e-155 550.8 381 70.9
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 8.1e-155 550.8 380 69.2
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 1.1e-154 550.4 380 67.6
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.8e-154 549.7 375 69.9
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 3.1e-154 548.9 376 69.7
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 5.3e-154 548.1 375 68.3
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 1.2e-153 547.0 358 72.9
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 1.2e-153 547.0 382 69.1
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.5e-153 546.6 377 68.7
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 1.5e-153 546.6 379 68.3
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 2.0e-153 546.2 377 70.3
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 5.8e-153 544.7 380 66.8
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 1.7e-152 543.1 381 69.3
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 2.9e-152 542.3 375 69.9
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 4.9e-152 541.6 375 69.6
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 4.9e-152 541.6 377 68.7
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 8.4e-152 540.8 380 67.9
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 1.9e-151 539.7 374 67.4
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 1.9e-151 539.7 377 69.2
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 5.4e-151 538.1 381 65.4
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 3.5e-150 535.4 386 66.8
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 6.0e-150 534.6 376 68.9
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 3.9e-149 531.9 375 68.5
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 1.1e-148 530.4 379 67.0
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-148 529.6 381 67.5
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 7.3e-148 527.7 378 68.5
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 2.1e-147 526.2 382 67.3
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.1e-147 526.2 375 68.0
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 3.6e-147 525.4 379 65.7
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 4.8e-147 525.0 375 67.7
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 6.2e-147 524.6 377 65.5
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-146 523.1 375 67.7
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-146 523.1 381 67.2
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.8e-146 523.1 377 64.7
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 2.4e-146 522.7 375 66.7
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 2.4e-146 522.7 375 65.6
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 3.1e-146 522.3 375 66.1
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 1.2e-145 520.4 353 70.3
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 2.6e-145 519.2 383 67.1
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 4.5e-145 518.5 380 66.8
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 8.4e-144 514.2 384 66.4
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.1e-143 513.8 383 65.3
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 1.9e-143 513.1 381 65.6
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 5.4e-143 511.5 355 69.6
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 9.3e-143 510.8 379 67.0
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 1.6e-142 510.0 382 66.0
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.3e-141 506.9 390 65.9
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.3e-141 506.9 381 64.0
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 2.3e-141 506.1 386 65.5
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 5.6e-140 501.5 391 64.7
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 1.3e-136 490.3 375 64.3
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 1.9e-135 486.5 359 66.9
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 1.3e-133 480.3 355 66.2
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 2.5e-132 476.1 384 61.2
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 7.4e-132 474.6 362 64.6
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 1.3e-131 473.8 357 65.8
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 4.8e-131 471.9 388 60.3
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 6.9e-130 468.0 298 75.8
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 1.3e-128 463.8 388 59.5
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 2.2e-123 446.4 412 54.6
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.9e-121 438.3 353 62.3
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 1.7e-120 436.8 381 59.6
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 3.3e-116 422.5 304 66.8
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 3.7e-115 419.1 367 58.0
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 5.0e-112 408.7 407 51.4
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 1.8e-109 400.2 285 67.4
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.0e-104 384.4 404 50.2
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.0e-104 384.4 404 50.2
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 5.3e-98 362.1 353 51.6
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.8e-90 337.0 251 65.3
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.7e-89 333.2 248 66.9
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 3.6e-86 322.8 381 47.8
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 4.7e-86 322.4 336 53.0
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 7.2e-79 298.5 182 77.5
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.7e-72 277.3 235 57.4
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 1.1e-58 231.5 189 59.8
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 3.3e-55 219.9 204 53.9
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 4.1e-50 203.0 316 36.7
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 2.8e-46 190.3 148 61.5
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.0e-44 184.1 127 61.4
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 1.0e-32 145.2 393 29.5
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.1e-29 135.2 89 65.2
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 1.2e-28 131.7 107 60.7
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 1.2e-28 131.7 107 60.7
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 1.2e-28 131.7 107 60.7
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.9e-24 116.7 88 60.2
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 5.3e-21 106.3 87 64.4
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 1.7e-19 101.3 83 62.7
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 8.4e-19 99.0 71 63.4
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.7e-09 67.4 44 68.2
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 1.5e-07 61.6 41 73.2
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 8.2e-06 55.8 190 27.4


User provided reference genes

Program Settings