Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 7.5e-96 354.0 197 100.0
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.9e-83 312.8 198 88.9
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 1.6e-66 256.5 197 72.6
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.0e-64 249.6 217 66.8
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 5.6e-51 204.9 189 64.6
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 2.7e-45 186.0 185 59.5
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 2.7e-45 186.0 185 59.5
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 6.0e-45 184.9 191 62.3
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.5e-43 180.3 187 54.5
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 5.7e-43 178.3 185 58.4
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 9.6e-43 177.6 185 58.4
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.3e-42 177.2 184 56.0
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.3e-42 177.2 185 54.6
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.6e-42 176.8 188 52.7
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 6.2e-42 174.9 190 56.8
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.4e-41 173.7 177 57.6
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.8e-41 173.3 185 54.6
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 3.1e-41 172.6 185 53.5
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 4.0e-41 172.2 181 54.7
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 4.0e-41 172.2 185 55.1
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 6.9e-41 171.4 185 56.2
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 1.2e-40 170.6 187 54.0
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 2.0e-40 169.9 180 56.1
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 4.5e-40 168.7 188 56.4
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 7.6e-40 167.9 181 55.2
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.2e-39 166.4 194 53.1
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 2.9e-39 166.0 198 49.5
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.8e-39 165.6 180 53.9
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.0e-39 165.2 186 52.7
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 8.4e-39 164.5 182 53.3
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 8.4e-39 164.5 183 53.0
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.1e-38 164.1 188 55.9
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.5e-38 162.9 194 51.0
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 4.2e-38 162.2 192 51.0
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 5.5e-38 161.8 190 51.6
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 7.1e-38 161.4 186 52.2
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 9.3e-38 161.0 187 52.9
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 1.6e-37 160.2 190 49.5
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.5e-37 159.1 183 50.3
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 3.5e-37 159.1 190 50.0
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.0e-36 157.5 192 50.0
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 2.3e-36 156.4 192 49.5
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 3.0e-36 156.0 188 48.4
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 8.7e-36 154.5 185 49.2
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 2.5e-35 152.9 188 46.3
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 3.3e-35 152.5 199 50.8
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.3e-35 152.5 181 51.9
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 2.8e-34 149.4 190 47.4
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 6.3e-34 148.3 181 50.3
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 6.3e-34 148.3 193 48.7
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 6.3e-34 148.3 189 49.2
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 8.2e-34 147.9 187 46.5
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 4.1e-33 145.6 189 48.7
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 4.1e-33 145.6 186 45.7
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.2e-32 144.1 183 47.0
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 1.5e-32 143.7 190 45.8
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.6e-32 142.9 185 51.4
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 5.9e-32 141.7 190 46.3
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.0e-31 141.0 185 49.7
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 1.3e-31 140.6 192 45.3
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.9e-31 139.4 185 45.4
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 2.9e-31 139.4 182 50.5
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 2.9e-31 139.4 189 47.6
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 3.8e-31 139.0 189 47.6
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 6.5e-31 138.3 185 48.6
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 6.5e-31 138.3 192 46.9
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 6.5e-31 138.3 184 44.6
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 8.5e-31 137.9 159 52.8
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.1e-30 137.5 185 44.9
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 5.5e-30 135.2 190 46.3
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 7.2e-30 134.8 184 45.1
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 9.4e-30 134.4 188 48.9
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 1.6e-29 133.7 189 47.6
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 3.6e-29 132.5 187 49.2
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 7.9e-29 131.3 159 50.3
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.0e-28 131.0 182 47.3
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 1.0e-28 131.0 160 51.9
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.4e-28 130.6 181 47.5
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 2.3e-28 129.8 194 45.9
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 3.0e-28 129.4 185 43.8
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.1e-27 127.5 182 46.2
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.5e-27 127.1 193 46.1
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 1.3e-26 124.0 155 52.3
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.8e-26 122.9 157 47.1
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.8e-26 122.9 195 42.6
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 4.8e-26 122.1 189 44.4
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.4e-25 120.6 187 42.2
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.4e-25 120.6 167 45.5
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.4e-25 119.8 187 43.3
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 5.3e-25 118.6 163 46.6
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 6.9e-25 118.2 166 45.8
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.2e-24 117.5 187 42.2
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.2e-24 117.5 187 42.2
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.2e-24 117.5 155 46.5
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.5e-24 117.1 187 42.2
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.5e-24 117.1 184 43.5
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 2.0e-24 116.7 157 47.8
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 2.6e-24 116.3 181 44.2
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 3.4e-24 115.9 188 42.0
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 4.5e-24 115.5 188 42.0
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 7.7e-24 114.8 181 43.6
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 7.7e-24 114.8 190 41.1
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 1.0e-23 114.4 188 41.5
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 1.0e-23 114.4 188 41.5
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 1.3e-23 114.0 62 96.8
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 2.2e-23 113.2 190 41.1
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 2.2e-23 113.2 190 41.1
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.2e-23 113.2 183 42.6
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 5.0e-23 112.1 188 40.4
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 1.1e-22 110.9 188 42.0
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 1.1e-22 110.9 188 42.0
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 1.9e-22 110.2 180 39.4
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.5e-22 109.8 173 39.9
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 3.2e-22 109.4 182 42.3
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 4.2e-22 109.0 186 40.9
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 4.2e-22 109.0 186 40.9
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 4.2e-22 109.0 188 39.9
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 4.2e-22 109.0 188 39.9
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 2.7e-21 106.3 180 44.4
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.7e-21 105.5 194 38.1
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.4e-20 104.0 185 41.1
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 5.1e-20 102.1 78 65.4
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.7e-20 101.7 177 39.0
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 8.8e-20 101.3 196 36.7
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 7.4e-19 98.2 158 40.5
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 9.7e-19 97.8 177 37.9
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 9.7e-19 97.8 178 38.2
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 1.3e-18 97.4 177 40.7
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 4.8e-18 95.5 157 39.5
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 6.3e-18 95.1 178 39.3
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.8e-17 93.6 180 38.3
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 3.1e-17 92.8 191 37.2
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.2e-16 90.9 177 37.3
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 2.0e-16 90.1 178 36.5
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.5e-16 89.4 178 37.1
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 4.5e-16 89.0 179 39.1
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 4.5e-16 89.0 179 39.1
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 1.7e-15 87.0 179 38.0
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 2.2e-15 86.7 179 38.0
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 2.2e-15 86.7 179 38.0
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 3.8e-15 85.9 191 39.3
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 8.5e-15 84.7 184 30.4
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 9.4e-14 81.3 205 28.8
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.9e-12 75.9 184 36.4
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 2.8e-10 69.7 55 60.0
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.4e-09 66.6 144 35.4
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 7.7e-08 61.6 78 39.7
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 7.7e-08 61.6 166 31.9
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 7.7e-08 61.6 184 27.7
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.0e-07 61.2 206 28.6
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 1.3e-07 60.8 157 30.6
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.2e-07 60.1 167 31.1
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 6.5e-07 58.5 41 68.3
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 8.5e-07 58.2 190 26.8
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.1e-06 57.8 159 30.2
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 7.2e-06 55.1 52 46.2


User provided reference genes

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