Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 6.0e-37 157.1 88 100.0
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.5e-29 131.3 88 90.9
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.3e-28 129.4 88 88.6
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.9e-27 125.6 88 85.2
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.1e-26 122.1 88 84.1
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.2e-24 116.3 89 80.9
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.8e-24 114.0 84 82.1
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 6.5e-23 110.5 83 79.5
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.8e-20 102.4 83 77.1
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 3.9e-20 101.3 112 64.3
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 8.2e-18 93.6 109 63.3
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 8.2e-18 93.6 80 71.2
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 8.2e-18 93.6 88 65.9
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 6.9e-17 90.5 88 65.9
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 1.2e-16 89.7 88 65.9
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.5e-16 89.4 88 67.0
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 2.0e-16 89.0 109 60.6
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 1.0e-15 86.7 88 63.6
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 8.5e-15 83.6 88 61.4
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 5.5e-14 80.9 83 63.9
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.2e-13 79.7 83 62.7
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 4.6e-13 77.8 87 58.6
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.4e-12 76.3 83 57.8
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.4e-12 76.3 83 57.8
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 6.7e-12 73.9 88 56.8
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 8.8e-12 73.6 101 52.5
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 2.5e-11 72.0 92 59.8
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 3.3e-11 71.6 83 56.6
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 5.7e-11 70.9 92 52.2
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 5.7e-11 70.9 88 50.0
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 7.4e-11 70.5 85 52.9
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 7.4e-11 70.5 79 59.5
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 7.4e-11 70.5 98 50.0
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 1.7e-10 69.3 95 53.7
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 3.7e-10 68.2 92 51.1
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 4.8e-10 67.8 88 50.0
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 6.3e-10 67.4 87 55.2
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 6.3e-10 67.4 88 51.1
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 6.3e-10 67.4 62 72.6
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 8.2e-10 67.0 88 47.7
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.4e-09 66.2 85 49.4
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 2.4e-09 65.5 85 51.8
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 4.1e-09 64.7 92 48.9
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.1e-09 64.7 93 54.8
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 4.1e-09 64.7 92 51.1
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 6.9e-09 63.9 86 50.0
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 9.1e-09 63.5 83 51.8
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 9.1e-09 63.5 76 52.6
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.2e-08 63.2 83 47.0
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 1.2e-08 63.2 88 46.6
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 1.2e-08 63.2 93 48.4
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.5e-08 62.8 92 52.2
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.5e-08 62.8 92 52.2
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 2.6e-08 62.0 95 48.4
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 2.6e-08 62.0 92 47.8
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 4.5e-08 61.2 47 68.1
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 5.9e-08 60.8 99 48.5
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 5.9e-08 60.8 104 48.1
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 7.7e-08 60.5 104 47.1
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 7.7e-08 60.5 83 47.0
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 7.7e-08 60.5 96 46.9
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.0e-07 60.1 92 51.1
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.0e-07 60.1 92 51.1
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 1.0e-07 60.1 59 62.7
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 1.0e-07 60.1 89 46.1
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 1.0e-07 60.1 83 51.8
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.0e-07 60.1 102 47.1
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 1.3e-07 59.7 76 56.6
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 1.3e-07 59.7 76 53.9
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.3e-07 59.7 94 48.9
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 1.3e-07 59.7 88 44.3
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 1.7e-07 59.3 48 62.5
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 1.7e-07 59.3 110 41.8
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 1.7e-07 59.3 74 54.1
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 2.2e-07 58.9 87 51.7
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 2.9e-07 58.5 77 53.2
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 3.8e-07 58.2 87 46.0
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 5.0e-07 57.8 96 45.8
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 6.5e-07 57.4 85 44.7
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 6.5e-07 57.4 40 75.0
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 6.5e-07 57.4 76 51.3
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 8.5e-07 57.0 86 50.0
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 8.5e-07 57.0 94 43.6
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 8.5e-07 57.0 100 44.0
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 1.4e-06 56.2 71 53.5
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 1.4e-06 56.2 71 53.5
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 1.4e-06 56.2 71 53.5
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 1.4e-06 56.2 94 46.8
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 1.9e-06 55.8 76 51.3
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.9e-06 55.8 67 55.2
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 2.5e-06 55.5 77 50.6
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 3.2e-06 55.1 92 42.4
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.2e-06 55.1 87 43.7
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 4.2e-06 54.7 47 63.8
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 5.5e-06 54.3 59 55.9
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 5.5e-06 54.3 85 45.9
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 7.2e-06 53.9 48 56.2
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 7.2e-06 53.9 48 56.2
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 7.2e-06 53.9 54 59.3
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 9.4e-06 53.5 49 57.1
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.4e-06 53.5 87 41.4
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 9.4e-06 53.5 92 45.7


User provided reference genes

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