Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 1.1e-221 773.1 404 100.0
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 1.3e-187 659.8 436 83.9
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 2.5e-138 496.1 470 64.0
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 2.1e-121 439.9 399 61.2
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 1.4e-120 437.2 399 61.2
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 1.2e-119 434.1 393 58.5
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 5.8e-119 431.8 398 58.3
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 3.9e-115 419.1 397 55.9
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 1.1e-114 417.5 391 57.0
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 3.3e-114 416.0 394 56.1
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 7.4e-114 414.8 400 56.8
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 2.8e-113 412.9 378 58.5
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 5.3e-112 408.7 395 57.2
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 2.0e-111 406.8 440 60.9
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 4.5e-111 405.6 395 54.9
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 4.2e-109 399.1 388 54.9
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 4.2e-109 399.1 393 54.5
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 7.9e-108 394.8 390 52.6
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 1.8e-107 393.7 427 51.3
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 1.5e-106 390.6 393 52.7
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 2.5e-106 389.8 393 54.5
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 1.3e-105 387.5 399 53.1
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 4.8e-105 385.6 392 52.8
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 3.1e-104 382.9 392 53.3
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 4.0e-104 382.5 397 54.2
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 6.9e-104 381.7 414 50.7
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 2.0e-103 380.2 345 58.3
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 4.5e-103 379.0 404 52.2
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 5.8e-103 378.6 392 52.6
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 1.7e-102 377.1 378 53.4
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 3.5e-100 369.4 395 52.4
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 4.6e-100 369.0 394 53.0
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 4.6e-100 369.0 395 52.7
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 6.0e-100 368.6 399 53.6
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 1.0e-99 367.9 391 52.7
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 1.3e-99 367.5 391 52.4
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.9e-99 365.9 416 48.8
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 1.1e-98 364.4 398 49.7
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 3.3e-98 362.8 397 50.6
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 4.3e-98 362.5 390 50.3
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 7.4e-98 361.7 419 48.4
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 7.4e-98 361.7 443 47.4
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 1.1e-96 357.8 394 51.3
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 1.4e-96 357.5 398 50.8
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 1.8e-96 357.1 467 46.9
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 3.1e-96 356.3 406 51.0
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 9.0e-96 354.8 409 53.1
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 3.4e-95 352.8 339 56.0
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 4.5e-95 352.4 328 55.8
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 4.5e-95 352.4 183 97.8
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 2.1e-92 343.6 393 49.1
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 1.8e-91 340.5 335 54.9
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 2.5e-90 336.7 371 51.2
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 7.4e-90 335.1 390 49.0
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 7.4e-90 335.1 396 50.8
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 2.4e-88 330.1 405 48.1
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 3.1e-88 329.7 398 44.0
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 3.1e-88 329.7 398 44.0
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 9.1e-88 328.2 186 90.9
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 1.2e-87 327.8 417 45.6
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 2.6e-87 326.6 395 46.3
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 3.4e-87 326.2 376 48.4
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 7.7e-87 325.1 400 45.5
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 1.7e-86 323.9 398 44.5
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 2.9e-86 323.2 398 43.2
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 3.8e-86 322.8 398 45.0
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 8.5e-86 321.6 407 43.7
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 2.1e-84 317.0 399 44.6
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 3.6e-84 316.2 361 53.2
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 3.9e-83 312.8 420 44.8
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 6.7e-83 312.0 391 47.1
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 2.0e-82 310.5 445 41.6
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 9.7e-82 308.1 431 41.3
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.8e-81 306.6 402 44.5
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 2.8e-81 306.6 362 48.9
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 8.2e-81 305.1 403 43.4
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 8.2e-81 305.1 338 50.6
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 1.4e-80 304.3 390 45.4
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 1.0e-78 298.1 419 42.5
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 2.2e-78 297.0 422 42.2
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 5.0e-78 295.8 164 90.2
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 8.5e-78 295.0 314 51.0
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 2.5e-77 293.5 410 41.7
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 4.2e-77 292.7 399 40.4
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 1.2e-76 291.2 395 41.3
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 4.7e-76 289.3 451 39.0
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 1.8e-75 287.3 310 50.0
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 5.2e-75 285.8 389 44.5
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 1.4e-72 277.7 353 47.3
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 1.4e-72 277.7 353 47.3
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 1.6e-71 274.2 323 48.3
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 5.9e-71 272.3 396 42.4
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 1.0e-70 271.6 393 43.0
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 2.7e-68 263.5 149 89.3
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 1.6e-63 247.7 190 75.8
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 4.4e-58 229.6 307 43.0
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 2.4e-56 223.8 393 36.9
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 1.6e-55 221.1 393 36.9
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 7.7e-55 218.8 173 63.0
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 1.5e-53 214.5 393 35.9
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 2.5e-37 160.6 317 36.0
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 1.1e-35 155.2 126 61.9
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 2.2e-25 120.9 91 64.8
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 2.2e-25 120.9 91 64.8
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 6.2e-20 102.8 161 42.2
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 2.4e-19 100.9 389 25.7
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 3.1e-19 100.5 156 41.0
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 4.0e-19 100.1 166 37.3
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 5.8e-18 96.3 113 47.8
Mapoly0056s0109 Marchantia polymorpha HOM05D007038 ORTHO05D008893 9.0e-11 72.4 233 24.0
HPP92_020432 Vanilla planifolia HOM05D000367 ORTHO05D008893 1.3e-09 68.6 93 45.2
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 2.7e-07 60.8 61 50.8


User provided reference genes

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