Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 3.0e-142 508.4 249 100.0
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 3.7e-140 501.5 249 98.4
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 3.1e-123 445.3 326 72.4
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 6.1e-119 431.0 250 83.6
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 8.3e-116 420.6 250 82.4
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 8.8e-110 400.6 250 78.8
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 1.2e-106 390.2 256 75.8
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 8.9e-102 374.0 254 72.8
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 5.7e-101 371.3 251 72.1
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 1.1e-99 367.1 255 71.8
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 1.6e-98 363.2 252 70.2
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 2.7e-98 362.5 249 71.9
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 2.5e-96 355.9 254 71.3
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 5.6e-96 354.8 249 70.3
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 9.5e-96 354.0 252 69.4
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 1.6e-95 353.2 253 68.8
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 2.8e-95 352.4 252 68.3
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 2.8e-95 352.4 249 68.3
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 2.8e-95 352.4 255 68.6
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 5.2e-94 348.2 251 68.1
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.9e-92 342.4 254 67.7
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 3.7e-92 342.0 252 66.3
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 4.9e-92 341.7 224 72.3
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 8.3e-92 340.9 252 65.1
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 8.3e-92 340.9 246 67.9
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 8.3e-92 340.9 255 65.5
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 4.1e-91 338.6 220 73.2
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.1e-91 338.6 214 75.2
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 7.0e-91 337.8 261 63.2
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 1.6e-90 336.7 223 71.3
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.7e-90 335.9 220 72.3
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 2.7e-90 335.9 234 68.8
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 6.0e-90 334.7 252 65.1
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 7.8e-90 334.3 250 64.4
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.0e-89 334.0 267 64.4
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 5.0e-89 331.6 249 65.9
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 5.0e-89 331.6 251 66.1
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 1.1e-88 330.5 219 69.9
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 1.6e-87 326.6 223 70.4
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.6e-87 326.6 250 64.0
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.6e-87 326.6 215 74.0
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.6e-87 325.5 223 70.4
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.7e-87 325.1 223 70.4
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 4.7e-87 325.1 220 70.5
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 6.2e-87 324.7 251 63.3
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.1e-86 323.9 223 70.0
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.3e-86 322.8 223 70.0
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.3e-86 322.8 220 70.0
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.3e-86 322.8 251 63.7
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 5.2e-86 321.6 251 65.3
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 5.2e-86 321.6 273 61.9
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 6.8e-86 321.2 223 68.6
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 3.4e-85 318.9 245 64.5
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 4.4e-85 318.5 216 69.0
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.4e-85 318.5 220 69.1
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 4.4e-85 318.5 252 64.3
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 7.5e-85 317.8 246 62.2
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 7.5e-85 317.8 269 60.2
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 1.7e-84 316.6 246 61.8
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.7e-84 316.6 281 59.1
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 2.2e-84 316.2 199 75.9
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 2.2e-84 316.2 268 60.8
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.1e-83 313.9 293 54.6
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.4e-83 313.5 215 69.8
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 2.1e-82 309.7 225 64.4
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 4.6e-82 308.5 238 63.9
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 7.8e-82 307.8 198 72.7
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 5.1e-81 305.1 196 70.9
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 6.6e-81 304.7 250 60.8
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 1.5e-80 303.5 248 62.1
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 2.5e-80 302.8 226 65.0
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 3.3e-80 302.4 221 67.4
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 2.1e-79 299.7 239 61.5
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.1e-78 297.4 266 56.8
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 2.4e-78 296.2 246 59.8
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.4e-78 296.2 250 60.4
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 5.2e-78 295.0 252 58.7
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.5e-77 293.5 211 65.9
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 1.7e-76 290.0 226 64.6
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 2.2e-76 289.7 223 63.7
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 2.9e-76 289.3 220 65.9
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 8.4e-76 287.7 226 63.7
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.2e-75 285.8 253 55.7
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 3.2e-75 285.8 194 69.6
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.6e-74 283.5 249 56.2
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 2.1e-74 283.1 284 51.4
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 4.6e-74 282.0 195 68.7
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 3.0e-73 279.3 223 60.5
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 3.0e-73 279.3 225 61.8
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 3.9e-73 278.9 223 60.5
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 3.9e-73 278.9 223 60.5
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 3.9e-73 278.9 223 60.5
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 2.5e-72 276.2 280 52.9
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 5.6e-72 275.0 220 60.9
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 7.3e-72 274.6 226 61.1
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 9.6e-72 274.2 223 61.9
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 9.6e-72 274.2 194 66.5
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 1.2e-71 273.9 175 73.7
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 1.6e-71 273.5 194 66.0
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.8e-71 272.7 253 53.8
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 2.8e-71 272.7 194 65.5
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 2.8e-71 272.7 219 61.6
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 4.0e-70 268.9 194 64.4
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 3.4e-69 265.8 223 60.5
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 4.8e-63 245.4 247 53.0
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.4e-62 243.8 215 55.8
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 3.4e-61 239.2 251 48.6
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 4.5e-61 238.8 249 49.4
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 5.8e-61 238.4 252 50.0
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 4.8e-55 218.8 193 53.4
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 9.9e-53 211.1 255 44.7
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 7.1e-43 178.3 149 58.4
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 3.4e-37 159.5 208 38.0
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 1.4e-35 154.1 186 37.6
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 9.1e-30 134.8 118 61.9
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 1.2e-29 134.4 163 38.0
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 1.7e-20 104.0 176 33.5
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 5.9e-13 79.0 88 43.2


User provided reference genes

Program Settings