Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g001370 Solanum pennellii HOM05D006119 ORTHO05D007641 5.3e-65 250.8 117 100.0
Solyc07g005410.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 6.5e-63 243.8 117 97.4
Migut.K00337 Erythranthe guttata HOM05D006119 ORTHO05D007641 2.8e-50 201.8 117 76.1
Nitab4.5_0004815g0030 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.2e-48 196.4 135 71.1
PGSC0003DMG400011173 Solanum tuberosum HOM05D006119 ORTHO05D007641 2.7e-48 195.3 91 96.7
SGA_v2.0_scaffold206G41813 Striga asiatica HOM05D006119 ORTHO05D007641 1.0e-47 193.4 117 74.4
Oeu038007.1 Olea europaea HOM05D006119 ORTHO05D007641 5.0e-47 191.0 115 75.7
Peaxi162Scf00347g01022 Petunia axillaris HOM05D006119 ORTHO05D007641 2.5e-46 188.7 114 75.4
CAN.G1116.12 Capsicum annuum HOM05D006119 ORTHO05D007641 1.2e-45 186.4 98 87.8
CSS0002774 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 6.8e-44 180.6 112 72.3
CSS0027400 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 6.8e-44 180.6 112 72.3
TAR626G1228 Trochodendron aralioides HOM05D006119 ORTHO05D007641 2.6e-43 178.7 111 72.1
Gorai.009G055300 Gossypium raimondii HOM05D006119 ORTHO05D007641 3.4e-43 178.3 117 69.2
Hund00673 Selenicereus undatus HOM05D006119 ORTHO05D007641 5.7e-43 177.6 113 70.8
Thecc.09G032800 Theobroma cacao HOM05D006119 ORTHO05D007641 5.7e-43 177.6 115 70.4
Lsat_1_v5_gn_5_91501 Lactuca sativa HOM05D006119 ORTHO05D007641 7.5e-43 177.2 113 72.6
arahy.Tifrunner.gnm1.ann1.I28AR0 Arachis hypogaea HOM05D006119 ORTHO05D007641 1.3e-42 176.4 112 69.6
Hma1.2p1_0028F.1_g017420 Hydrangea macrophylla HOM05D006119 ORTHO05D007641 1.3e-42 176.4 112 70.5
Peaxi162Scf00062g00419 Petunia axillaris HOM05D006119 ORTHO05D007641 4.8e-42 174.5 100 80.0
Sopen12g005020 Solanum pennellii HOM05D006119 ORTHO05D007641 6.3e-42 174.1 100 79.0
PGSC0003DMG400007897 Solanum tuberosum HOM05D006119 ORTHO05D007641 6.3e-42 174.1 100 79.0
TAR625G1054 Trochodendron aralioides HOM05D006119 ORTHO05D007641 8.3e-42 173.7 111 69.4
arahy.Tifrunner.gnm1.ann1.TAM15G Arachis hypogaea HOM05D006119 ORTHO05D007641 1.1e-41 173.3 111 69.4
Nitab4.5_0006408g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.8e-41 172.6 89 87.6
RhsimUnG0039700 Rhododendron simsii HOM05D006119 ORTHO05D007641 2.4e-41 172.2 101 77.2
Solyc12g010150.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 3.1e-41 171.8 99 78.8
Manes.06G037000 Manihot esculenta HOM05D006119 ORTHO05D007641 4.1e-41 171.4 112 68.8
Actinidia23551 Actinidia chinensis HOM05D006119 ORTHO05D007641 9.1e-41 170.2 112 68.8
CiPaw.15G174900 Carya illinoinensis HOM05D006119 ORTHO05D007641 1.2e-40 169.9 113 66.4
Potri.006G186500 Populus trichocarpa HOM05D006119 ORTHO05D007641 2.7e-40 168.7 115 67.0
PGR102G3064 Punica granatum HOM05D006119 ORTHO05D007641 7.7e-40 167.2 112 67.0
Cfa020842 Carpinus fangiana HOM05D006119 ORTHO05D007641 1.0e-39 166.8 113 65.5
Haze_19227 Corylus avellana HOM05D006119 ORTHO05D007641 1.3e-39 166.4 113 65.5
Oeu021261.1 Olea europaea HOM05D006119 ORTHO05D007641 1.3e-39 166.4 99 74.7
PSO111G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 1.7e-39 166.0 112 67.9
Aqoxy7G03440 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 2.9e-39 165.2 109 69.7
PSO561G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 2.9e-39 165.2 112 67.9
vmacro06086 Vaccinium macrocarpon HOM05D006119 ORTHO05D007641 3.8e-39 164.9 123 64.2
CDE05G1219 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 5.0e-39 164.5 112 63.4
CARHR271810 Cardamine hirsuta HOM05D006119 ORTHO05D007641 6.6e-39 164.1 112 63.4
Ca_21116_v3 Cicer arietinum L. HOM05D006119 ORTHO05D007641 8.6e-39 163.7 115 65.2
ECA234G1280 Erigeron canadensis HOM05D006119 ORTHO05D007641 1.5e-38 162.9 106 69.8
Sabra18G0092300 Salix brachista HOM05D006119 ORTHO05D007641 1.5e-38 162.9 115 63.5
QL02p092825 Quercus lobata HOM05D006119 ORTHO05D007641 1.9e-38 162.5 111 64.9
AL8G34100 Arabidopsis lyrata HOM05D006119 ORTHO05D007641 3.3e-38 161.8 112 62.5
Lj4g0015042 Lotus japonicus HOM05D006119 ORTHO05D007641 5.5e-38 161.0 112 67.0
Potri.018G109400 Populus trichocarpa HOM05D006119 ORTHO05D007641 5.5e-38 161.0 115 63.5
AT5G58005 Arabidopsis thaliana HOM05D006119 ORTHO05D007641 7.2e-38 160.6 112 61.6
Medtr4g131150 Medicago truncatula HOM05D006119 ORTHO05D007641 7.2e-38 160.6 114 67.5
HPP92_017474 Vanilla planifolia HOM05D006119 ORTHO05D007641 7.2e-38 160.6 96 71.9
Dinv42873 Davidia involucrata HOM05D006119 ORTHO05D007641 9.5e-38 160.2 100 72.0
Dinv43227 Davidia involucrata HOM05D006119 ORTHO05D007641 9.5e-38 160.2 100 72.0
Cc06_g15170 Coffea canephora HOM05D006119 ORTHO05D007641 1.2e-37 159.8 100 73.0
Aa31LG3G13820 Aethionema arabicum HOM05D006119 ORTHO05D007641 1.6e-37 159.5 112 62.5
BcaB01g04471 Brassica carinata HOM05D006119 ORTHO05D007641 1.6e-37 159.5 112 60.7
MBI15_g26716_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 1.6e-37 159.5 113 62.8
GSVIVG01023584001 Vitis vinifera HOM05D006119 ORTHO05D007641 1.6e-37 159.5 100 72.0
Rhsim03G0256600 Rhododendron simsii HOM05D006119 ORTHO05D007641 2.1e-37 159.1 128 62.5
SalBow1G1238 Salvia bowleyana HOM05D006119 ORTHO05D007641 2.1e-37 159.1 100 70.0
Carub.0008s1855 Capsella rubella HOM05D006119 ORTHO05D007641 3.6e-37 158.3 112 60.7
Ciclev10009941m.g Citrus clementina HOM05D006119 ORTHO05D007641 3.6e-37 158.3 112 63.4
Thhalv10015049m.g Eutrema salsugineum HOM05D006119 ORTHO05D007641 4.7e-37 157.9 112 60.7
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 6.1e-37 157.5 102 65.7
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 6.1e-37 157.5 102 65.7
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 6.1e-37 157.5 102 65.7
Sed0003082 Sechium edule HOM05D006119 ORTHO05D007641 6.1e-37 157.5 112 61.6
C03p14650 Brassica napus HOM05D006119 ORTHO05D007641 8.0e-37 157.1 112 60.7
MSTRG.26287 Avicennia marina HOM05D006119 ORTHO05D007641 1.4e-36 156.4 100 68.0
Zm00001eb041130 Zea mays HOM05D006119 ORTHO05D007641 3.0e-36 155.2 98 67.3
ClCG06G012280 Citrullus lanatus HOM05D006119 ORTHO05D007641 4.0e-36 154.8 102 63.7
Lalb_Chr07g0179791 Lupinus albus HOM05D006119 ORTHO05D007641 5.2e-36 154.5 100 70.0
Actinidia04288 Actinidia chinensis HOM05D006119 ORTHO05D007641 1.2e-35 153.3 100 69.0
FvH4_1g01100 Fragaria vesca HOM05D006119 ORTHO05D007641 2.0e-35 152.5 113 60.2
FAN19G0026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.0e-35 152.5 113 60.2
Eucgr.C02591 Eucalyptus grandis HOM05D006119 ORTHO05D007641 2.6e-35 152.1 114 59.6
FAN28G1026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.6e-35 152.1 113 60.2
Glyma.02G202700 Glycine max HOM05D006119 ORTHO05D007641 2.6e-35 152.1 100 69.0
ATR0739G093 Amborella trichopoda HOM05D006119 ORTHO05D007641 3.4e-35 151.8 102 62.7
MELO3C029440.2 Cucumis melo HOM05D006119 ORTHO05D007641 3.4e-35 151.8 123 57.7
Eucgr.L03135 Eucalyptus grandis HOM05D006119 ORTHO05D007641 3.4e-35 151.8 112 59.8
FAN26G3335 Fragaria x ananassa HOM05D006119 ORTHO05D007641 3.4e-35 151.8 113 60.2
Atru.chr7.85 Acer truncatum HOM05D006119 ORTHO05D007641 4.4e-35 151.4 107 64.5
COL.COLO4_18789 Corchorus olitorius HOM05D006119 ORTHO05D007641 5.7e-35 151.0 106 64.2
FAN23G1211 Fragaria x ananassa HOM05D006119 ORTHO05D007641 5.7e-35 151.0 113 59.3
Os08g0441400 Oryza sativa ssp. japonica HOM05D006119 ORTHO05D007641 7.5e-35 150.6 98 66.3
Nn8g39847 Nelumbo nucifera HOM05D006119 ORTHO05D007641 9.8e-35 150.2 100 68.0
Duzib187G0693 Durio zibethinus HOM05D006119 ORTHO05D007641 1.7e-34 149.4 104 65.4
Gohir.A05G052000 Gossypium hirsutum HOM05D006119 ORTHO05D007641 1.7e-34 149.4 100 67.0
Gohir.D05G053500 Gossypium hirsutum HOM05D006119 ORTHO05D007641 2.2e-34 149.1 100 67.0
Nitab4.5_0001478g0060 Nicotiana tabacum HOM05D006119 ORTHO05D007641 2.8e-34 148.7 109 67.0
Nitab4.5_0002315g0130 Nicotiana tabacum HOM05D006119 ORTHO05D007641 2.8e-34 148.7 108 66.7
TPR.G39188 Trifolium pratense HOM05D006119 ORTHO05D007641 4.9e-34 147.9 118 61.9
Rhsim01G0035400 Rhododendron simsii HOM05D006119 ORTHO05D007641 1.4e-33 146.4 93 72.0
Manes.14G112500 Manihot esculenta HOM05D006119 ORTHO05D007641 3.1e-33 145.2 99 64.6
TWI63G1376 Tripterygium wilfordii HOM05D006119 ORTHO05D007641 4.1e-33 144.8 100 67.0
Actinidia38675 Actinidia chinensis HOM05D006119 ORTHO05D007641 7.0e-33 144.1 90 70.0
Nitab4.5_0001813g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.6e-32 142.9 88 71.6
Sc18g0007620 Simmondsia chinensis HOM05D006119 ORTHO05D007641 1.6e-32 142.9 100 67.0
unitig_899.g15448 Utricularia gibba HOM05D006119 ORTHO05D007641 2.0e-32 142.5 89 70.8
Cpa.g.sc46.139 Carica papaya HOM05D006119 ORTHO05D007641 2.7e-32 142.1 100 62.0
Psat0ss6646g0160 Pisum sativum HOM05D006119 ORTHO05D007641 3.8e-31 138.3 102 61.8
AUR62043251 Chenopodium quinoa HOM05D006119 ORTHO05D007641 6.6e-31 137.5 110 55.5
Phvul.003G157000 Phaseolus vulgaris HOM05D006119 ORTHO05D007641 1.1e-30 136.7 95 63.2
Nitab4.5_0013449g0010 Nicotiana tabacum HOM05D006119 ORTHO05D007641 3.3e-30 135.2 88 69.3
CANSAT11G0807 Cannabis sativa HOM05D006119 ORTHO05D007641 7.3e-30 134.0 100 60.0
Prupe.7G260900 Prunus persica HOM05D006119 ORTHO05D007641 1.2e-29 133.3 100 59.0
CsaV3_1G028790 Cucumis sativus L. HOM05D006119 ORTHO05D007641 2.8e-29 132.1 99 58.6
HanXRQChr10g0314681 Helianthus annuus HOM05D006119 ORTHO05D007641 8.0e-29 130.6 100 62.0
DCAR_020878 Daucus carota HOM05D006119 ORTHO05D007641 1.0e-28 130.2 81 71.6
MD15G1154500 Malus domestica HOM05D006119 ORTHO05D007641 1.0e-28 130.2 100 57.0
Glyma.17G075100 Glycine max HOM05D006119 ORTHO05D007641 1.4e-28 129.8 85 69.4
Sed0018834 Sechium edule HOM05D006119 ORTHO05D007641 1.8e-28 129.4 86 62.8
MD02G1009100 Malus domestica HOM05D006119 ORTHO05D007641 3.4e-27 125.2 100 56.0
RcHm_v2.0_Chr2g0085901 Rosa chinensis HOM05D006119 ORTHO05D007641 3.4e-27 125.2 100 56.0
CAN.G551.35 Capsicum annuum HOM05D006119 ORTHO05D007641 9.8e-27 123.6 75 76.0
EL10Ac8g18851 Beta vulgaris HOM05D006119 ORTHO05D007641 3.2e-25 118.6 92 57.6
Aqoxy4G01852 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 5.4e-25 117.9 69 75.4
SMO137G0238 Selaginella moellendorffii HOM05D006119 ORTHO05D007641 1.9e-22 109.4 99 51.5
Mapoly0012s0137 Marchantia polymorpha HOM05D006119 ORTHO05D007641 5.6e-22 107.8 88 53.4
Pp3c18_18500 Physcomitrium patens HOM05D006119 ORTHO05D007641 9.5e-22 107.1 106 49.1
Pp3c21_10430 Physcomitrium patens HOM05D006119 ORTHO05D007641 9.8e-19 97.1 106 42.5
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 2.9e-18 95.5 60 63.3
Sp6g19680 Schrenkiella parvula HOM05D006119 ORTHO05D007641 2.9e-18 95.5 75 54.7
SEGI_38164 Sequoiadendron giganteum HOM05D006119 ORTHO05D007641 4.1e-17 91.7 64 59.4
AagrBONN_evm.TU.Sc2ySwM_228.1886 Anthoceros agrestis HOM05D006119 ORTHO05D007641 1.3e-15 86.7 61 55.7
Nitab4.5_0003612g0050 Nicotiana tabacum HOM05D006119 ORTHO05D007641 2.3e-15 85.9 49 75.5
CDE05G1090 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 5.2e-12 74.7 66 50.0
Rhsim04G0128900 Rhododendron simsii HOM05D002149 ORTHO05D002154 2.3e-07 59.3 42 66.7
Pp3c22_3250 Physcomitrium patens HOM05D006119 ORTHO05D007641 1.1e-06 57.0 71 38.0
MBI15_g07754_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 7.3e-06 54.3 52 50.0


User provided reference genes

Program Settings