Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 3.0e-34 147.9 73 100.0
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 6.8e-34 146.7 73 98.6
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 2.7e-30 134.8 69 94.2
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 9.8e-25 116.3 59 93.2
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 9.8e-25 116.3 59 93.2
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 9.8e-25 116.3 66 90.9
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 1.7e-24 115.5 85 72.9
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 1.2e-22 109.4 68 75.0
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 4.5e-22 107.5 70 72.9
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 1.0e-21 106.3 71 71.8
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 1.3e-21 105.9 71 71.8
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 2.9e-21 104.8 61 80.3
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 5.0e-21 104.0 62 79.0
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 5.0e-21 104.0 70 67.1
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 8.6e-21 103.2 69 69.6
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 8.6e-21 103.2 71 67.6
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 1.1e-20 102.8 72 68.1
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.5e-20 102.4 63 77.8
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 1.5e-20 102.4 64 75.0
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.5e-20 102.4 63 77.8
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 1.5e-20 102.4 71 67.6
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 1.9e-20 102.1 72 68.1
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 2.5e-20 101.7 76 68.4
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 2.5e-20 101.7 71 67.6
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 3.3e-20 101.3 63 76.2
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 3.3e-20 101.3 71 70.4
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 3.3e-20 101.3 71 70.4
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 4.2e-20 100.9 63 76.2
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 4.2e-20 100.9 71 69.0
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 4.2e-20 100.9 63 76.2
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 4.2e-20 100.9 63 71.4
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 5.5e-20 100.5 63 73.0
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 5.5e-20 100.5 71 66.2
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 1.2e-19 99.4 68 69.1
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.6e-19 99.0 71 67.6
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 2.1e-19 98.6 71 64.8
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 2.1e-19 98.6 69 66.7
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 2.8e-19 98.2 62 77.4
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 3.6e-19 97.8 71 69.0
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 3.6e-19 97.8 61 77.0
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 6.1e-19 97.1 70 62.9
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 8.0e-19 96.7 71 66.2
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 8.0e-19 96.7 61 73.8
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 1.0e-18 96.3 72 63.9
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 1.4e-18 95.9 63 73.0
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 1.4e-18 95.9 69 65.2
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.4e-18 95.9 73 64.4
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 5.2e-18 94.0 72 65.3
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 1.2e-17 92.8 72 63.9
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 1.2e-17 92.8 53 81.1
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 1.5e-17 92.4 59 74.6
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 2.0e-17 92.0 65 69.2
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.4e-17 91.3 65 67.7
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 4.4e-17 90.9 63 66.7
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 7.5e-17 90.1 66 63.6
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 9.8e-17 89.7 61 68.9
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 1.3e-16 89.4 62 67.7
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 1.3e-16 89.4 61 68.9
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 1.3e-16 89.4 64 64.1
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 2.2e-16 88.6 61 68.9
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 2.8e-16 88.2 64 65.6
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 6.3e-16 87.0 61 70.5
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 8.3e-16 86.7 63 68.3
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 1.1e-15 86.3 65 66.2
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 1.4e-15 85.9 69 63.8
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.8e-15 85.5 63 65.1
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 1.8e-15 85.5 63 65.1
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 2.4e-15 85.1 67 65.7
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 2.4e-15 85.1 67 65.7
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 2.4e-15 85.1 67 61.2
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 3.2e-15 84.7 62 64.5
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 7.0e-15 83.6 57 70.2
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 7.0e-15 83.6 60 66.7
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 7.0e-15 83.6 63 65.1
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 9.2e-15 83.2 53 71.7
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 1.2e-14 82.8 66 65.2
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 1.6e-14 82.4 71 59.2
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 2.0e-14 82.0 61 62.3
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 2.0e-14 82.0 67 58.2
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 2.0e-14 82.0 51 76.5
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.7e-14 81.6 61 62.3
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.7e-14 81.6 61 62.3
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.7e-14 81.6 61 62.3
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 3.5e-14 81.3 61 62.3
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 3.5e-14 81.3 61 62.3
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 5.9e-14 80.5 62 62.9
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.9e-14 80.5 53 71.7
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 1.0e-13 79.7 60 58.3
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 1.3e-13 79.3 61 67.2
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 1.3e-13 79.3 63 65.1
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.7e-13 79.0 43 86.0
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.3e-13 78.6 63 61.9
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.3e-13 78.6 63 61.9
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 2.9e-13 78.2 61 60.7
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 5.0e-13 77.4 68 57.4
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 6.6e-13 77.0 62 59.7
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 8.6e-13 76.6 65 60.0
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.5e-12 75.9 57 66.7
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.9e-12 75.5 59 59.3
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 3.3e-12 74.7 62 54.8
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 3.1e-10 68.2 43 74.4
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 2.4e-07 58.5 37 73.0


User provided reference genes

Program Settings