Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.9e-122 442.6 228 100.0
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 7.8e-121 437.2 228 98.7
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.3e-120 436.4 228 98.7
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 1.7e-115 419.5 228 93.9
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.6e-112 407.5 228 91.2
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 1.7e-107 392.9 228 89.0
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 4.9e-107 391.3 228 88.6
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 5.4e-106 387.9 228 88.2
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 3.5e-105 385.2 228 86.0
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.5e-105 385.2 215 90.7
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 6.0e-105 384.4 228 86.8
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.3e-104 383.3 228 86.0
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 2.3e-104 382.5 228 85.5
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.0e-104 382.1 228 86.0
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 5.1e-104 381.3 228 83.3
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 5.1e-104 381.3 228 84.6
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 6.6e-104 380.9 228 86.0
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.5e-103 379.8 215 90.7
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.9e-103 379.4 228 85.5
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.9e-103 379.4 228 85.5
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 1.9e-103 379.4 228 82.9
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.9e-103 379.4 228 84.6
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.5e-103 379.0 228 85.5
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.5e-103 379.0 228 84.6
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.5e-103 379.0 228 85.5
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 7.3e-103 377.5 229 86.0
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.6e-103 377.1 228 86.0
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.1e-102 375.9 228 85.5
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 2.1e-102 375.9 228 85.5
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 3.6e-102 375.2 228 84.2
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.2e-102 374.4 228 83.3
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 8.1e-102 374.0 230 83.9
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 85.0
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.1e-101 373.6 228 85.5
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.1e-101 373.6 228 83.3
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.4e-101 373.2 229 84.7
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 2.4e-101 372.5 230 85.2
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 2.4e-101 372.5 229 85.2
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 3.1e-101 372.1 228 83.8
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 4.0e-101 371.7 230 83.9
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.3e-101 371.3 228 82.9
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 6.9e-101 370.9 228 82.9
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 6.9e-101 370.9 227 83.3
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 9.0e-101 370.5 230 83.5
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 9.0e-101 370.5 228 84.2
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 9.0e-101 370.5 228 82.0
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.2e-100 370.2 228 82.9
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 83.3
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.6e-100 369.0 230 83.0
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.4e-100 368.6 230 83.0
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 4.5e-100 368.2 228 82.5
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 83.3
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 5.8e-100 367.9 228 82.9
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 82.8
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 7.6e-100 367.5 225 84.4
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 9.9e-100 367.1 228 80.7
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 9.9e-100 367.1 228 81.6
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 9.9e-100 367.1 228 81.6
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.7e-99 366.3 228 81.1
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.7e-99 366.3 228 82.9
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.7e-99 366.3 228 82.5
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 2.2e-99 365.9 228 82.0
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 3.8e-99 365.2 220 84.5
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 3.8e-99 365.2 215 87.0
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.9e-99 364.8 227 82.4
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 4.9e-99 364.8 228 81.1
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 6.4e-99 364.4 228 81.1
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 8.4e-99 364.0 228 81.1
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 8.4e-99 364.0 229 82.1
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.4e-98 363.2 228 81.1
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.9e-98 362.8 234 80.8
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 5.4e-98 361.3 228 80.7
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 9.3e-98 360.5 228 78.9
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.6e-97 359.8 226 82.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.1e-97 359.4 219 85.8
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 4.6e-97 358.2 228 79.8
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 7.9e-97 357.5 216 84.3
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 1.8e-96 356.3 226 80.5
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.0e-96 355.5 215 81.4
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 3.9e-96 355.1 225 81.8
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 6.7e-96 354.4 228 80.3
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 6.7e-96 354.4 228 80.3
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 8.7e-96 354.0 228 80.3
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-95 353.6 228 80.3
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.9e-95 352.8 218 83.0
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 2.5e-95 352.4 218 81.7
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 3.3e-95 352.1 228 78.5
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.3e-95 352.1 228 78.9
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 4.3e-95 351.7 228 79.8
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 5.6e-95 351.3 229 81.2
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 7.4e-95 350.9 216 83.3
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 7.4e-95 350.9 208 86.5
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.6e-94 349.7 229 80.8
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.6e-94 349.7 218 81.7
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.6e-94 349.7 215 84.2
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 1.6e-94 349.7 228 78.5
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 2.1e-94 349.4 218 82.6
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 3.1e-93 345.5 215 81.9
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.1e-93 345.5 207 84.5
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 3.1e-93 345.5 215 80.9
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 3.1e-93 345.5 215 80.9
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 5.3e-93 344.7 228 81.1
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 6.9e-93 344.4 226 79.2
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.5e-92 343.2 228 76.8
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 2.0e-92 342.8 266 69.2
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 3.4e-92 342.0 228 76.3
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.3e-91 340.1 207 82.6
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.7e-91 339.7 192 90.1
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 2.2e-91 339.3 215 80.9
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.2e-91 339.3 206 83.0
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 8.4e-91 337.4 215 79.1
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.8e-88 329.7 215 79.1
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.5e-87 326.6 203 84.2
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.9e-87 326.2 229 74.2
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 9.0e-85 317.4 228 74.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.2e-84 317.0 196 82.7
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.2e-84 317.0 213 75.6
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 5.5e-82 308.1 191 82.2
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.5e-79 299.3 196 77.6
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 5.9e-76 288.1 215 68.8
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.1e-74 283.9 183 80.9
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.2e-73 280.4 221 66.5
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 4.6e-73 278.5 164 86.0
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.0e-72 277.3 230 67.8
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 5.1e-72 275.0 225 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 2.2e-67 259.6 193 66.8
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 8.5e-67 257.7 228 64.9
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 1.1e-66 257.3 197 71.1
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.4e-66 256.9 193 72.0
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.5e-66 256.1 164 77.4
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.0e-64 250.8 160 78.1
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.2e-62 243.0 150 80.0
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 7.0e-61 238.0 238 54.2
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.6e-60 236.1 154 77.9
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 7.2e-58 228.0 156 77.6
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.1e-53 214.2 216 53.2
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.6e-52 209.5 132 78.8
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.5e-50 203.8 194 60.8
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 8.0e-41 171.4 100 81.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 5.2e-40 168.7 109 79.8
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.1e-37 159.5 115 72.2
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.5e-31 140.6 92 76.1
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.2e-29 132.9 109 65.1
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.0e-28 130.2 88 75.0
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 2.8e-25 119.8 135 53.3
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.3e-24 116.7 113 61.1
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 4.6e-20 102.4 63 76.2
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.8e-17 93.2 51 90.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.8e-16 90.5 98 52.0
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 7.1e-13 78.6 71 64.8
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 5.1e-11 72.4 208 28.8
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 7.3e-10 68.6 114 40.4
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 9.5e-10 68.2 68 54.4
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.5e-07 60.8 63 54.0


User provided reference genes

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