Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 9.5e-178 626.7 313 100.0
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.3e-174 616.3 313 98.1
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.3e-139 500.0 321 82.2
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 4.8e-129 464.9 245 95.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 7.2e-117 424.5 321 71.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.7e-110 403.3 222 88.7
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.9e-109 399.8 224 88.4
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.2e-100 370.5 297 64.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 2.7e-100 369.4 270 69.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.3e-99 366.3 288 64.9
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.0e-99 365.9 302 60.9
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 6.3e-97 358.2 295 62.4
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 6.3e-97 358.2 306 60.1
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.5e-95 352.4 307 60.9
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 4.5e-95 352.1 266 66.2
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.0e-94 350.9 263 68.4
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 6.6e-94 348.2 270 63.7
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 8.6e-94 347.8 271 63.1
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.5e-93 346.3 295 60.3
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 4.2e-93 345.5 288 60.4
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 4.2e-93 345.5 219 76.7
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 5.5e-93 345.1 259 65.6
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 6.1e-92 341.7 299 59.5
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.0e-91 340.9 297 60.3
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.8e-91 340.1 293 60.4
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.3e-91 339.7 267 63.3
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.3e-91 339.7 264 64.0
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 3.0e-91 339.3 275 62.9
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 4.0e-91 339.0 294 60.2
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 4.0e-91 339.0 309 56.3
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 6.8e-91 338.2 289 59.9
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 2.6e-90 336.3 318 58.5
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 5.7e-90 335.1 287 59.2
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 9.8e-90 334.3 256 64.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.7e-89 333.6 312 55.1
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.2e-89 333.2 306 56.9
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.2e-89 333.2 266 61.7
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 3.7e-89 332.4 255 65.9
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-88 330.9 257 63.4
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 3.1e-88 329.3 260 62.3
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 4.1e-88 328.9 263 63.5
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 9.2e-88 327.8 292 56.8
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.2e-87 327.4 287 57.5
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 2.0e-87 326.6 263 62.7
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 2.0e-87 326.6 263 63.1
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.5e-87 325.9 312 54.8
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 4.5e-87 325.5 259 61.4
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 5.9e-87 325.1 272 58.1
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.0e-86 324.3 255 63.5
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.0e-86 324.3 306 54.6
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.9e-86 322.8 292 55.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 2.9e-86 322.8 219 72.6
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 3.8e-86 322.4 266 60.9
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 6.6e-86 321.6 292 57.9
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.6e-86 321.2 293 56.0
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 8.6e-86 321.2 254 62.6
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.5e-85 319.7 309 55.0
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 3.3e-85 319.3 298 56.0
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 4.7e-84 315.5 277 59.9
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 6.1e-84 315.1 256 60.5
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 6.1e-84 315.1 262 60.3
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.0e-84 314.7 291 54.6
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 8.0e-84 314.7 258 59.7
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.4e-83 313.9 264 58.3
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.4e-83 313.9 276 60.1
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.1e-83 312.8 299 56.2
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 8.9e-83 311.2 267 59.6
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 5.8e-82 308.5 257 57.6
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 6.4e-81 305.1 253 58.9
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.4e-80 303.1 381 46.2
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.2e-80 302.8 222 66.7
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 6.0e-79 298.5 334 49.7
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.3e-78 297.4 334 49.7
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.0e-78 296.2 267 56.9
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 3.9e-78 295.8 283 54.1
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 6.6e-78 295.0 295 54.6
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 8.6e-78 294.7 263 56.7
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.9e-77 293.5 263 56.3
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.5e-77 293.1 373 45.0
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 2.5e-77 293.1 272 55.5
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 5.6e-77 292.0 258 56.2
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 7.3e-77 291.6 255 55.3
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.2e-76 290.8 338 48.8
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 2.8e-76 289.7 254 58.7
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.8e-76 289.7 373 45.8
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.1e-75 287.7 217 62.7
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 2.3e-75 286.6 269 55.0
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 8.9e-75 284.6 254 55.1
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 3.4e-74 282.7 281 53.7
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 4.4e-74 282.3 313 48.9
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.4e-74 282.3 270 54.8
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 7.5e-74 281.6 300 52.3
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 9.8e-74 281.2 266 54.9
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-73 280.4 270 54.4
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.7e-73 280.4 284 52.8
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.9e-73 279.6 284 52.5
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.9e-73 279.6 284 52.5
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 3.7e-73 279.3 260 55.0
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 8.3e-73 278.1 284 52.5
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-72 277.7 261 54.8
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.4e-72 277.3 262 54.2
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.4e-72 275.4 280 53.6
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.2e-71 274.2 301 48.8
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-70 271.2 252 55.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.0e-70 271.2 305 48.2
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.3e-70 270.0 273 51.3
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.0e-70 269.6 313 48.2
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.0e-70 269.6 224 56.2
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.1e-69 267.7 256 55.1
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.5e-69 267.3 268 53.4
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-69 266.9 270 53.3
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 2.5e-69 266.5 257 51.8
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.3e-69 266.2 220 60.9
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 2.8e-68 263.1 226 59.3
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 8.1e-68 261.5 281 49.8
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 8.1e-68 261.5 263 51.0
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.4e-67 260.8 293 50.2
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.4e-67 260.8 269 51.7
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.1e-67 259.6 233 56.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 6.8e-67 258.5 226 57.5
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.3e-65 254.2 195 62.1
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.1e-64 251.1 201 62.2
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 8.6e-62 241.5 259 50.2
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.1e-60 236.9 178 66.3
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.8e-57 226.1 197 57.4
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.3e-54 217.6 303 43.6
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.7e-54 217.2 217 51.6
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.5e-53 213.4 218 51.4
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.6e-52 210.7 215 50.7
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.1e-51 208.0 202 52.0
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.8e-51 207.2 158 63.3
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 2.4e-51 206.8 202 51.5
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.1e-51 206.5 209 51.2
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 3.1e-51 206.5 202 52.5
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 4.0e-51 206.1 202 51.5
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 5.3e-51 205.7 202 52.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.8e-50 202.2 202 52.0
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.4e-49 198.4 212 49.5
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 9.3e-48 194.9 169 59.2
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.1e-45 188.0 204 47.1
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 7.3e-45 185.3 139 65.5
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 2.8e-44 183.3 224 45.5
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 8.1e-44 181.8 126 71.4
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 6.9e-43 178.7 168 54.2
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.2e-42 177.9 151 60.9
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.2e-39 167.9 143 58.7
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.6e-39 167.5 232 42.7
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 5.6e-37 159.1 177 50.8
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 4.0e-35 152.9 234 40.2
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.4e-34 149.8 158 51.9
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 7.6e-34 148.7 120 63.3
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 3.8e-33 146.4 257 35.8
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-32 144.8 128 59.4
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 7.1e-32 142.1 117 63.2
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.7e-31 140.2 189 43.9
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 7.9e-31 138.7 120 61.7
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.3e-30 137.1 135 51.9
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.9e-30 136.3 194 41.8
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 5.1e-30 136.0 139 53.2
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 1.7e-25 120.9 251 34.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.4e-24 117.9 76 72.4
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.4e-24 117.9 80 71.2
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 6.7e-22 109.0 105 56.2
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 5.3e-19 99.4 87 51.7
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 3.4e-18 96.7 84 51.2
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.8e-14 84.3 85 51.8
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.4e-11 74.7 178 36.5
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 1.4e-11 74.7 137 36.5
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.6e-10 70.5 231 26.8
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.1e-08 65.1 162 32.1
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.4e-08 64.7 58 53.4
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 1.4e-08 64.7 77 49.4
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 4.7e-07 59.7 132 34.1


User provided reference genes

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