Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 1.1e-79 300.1 161 100.0
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.7e-77 292.7 161 92.5
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 9.5e-73 276.9 161 91.3
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.6e-49 198.0 173 59.5
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.4e-47 193.4 173 60.1
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 4.2e-36 155.2 165 52.7
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.2e-36 155.2 193 44.6
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 4.2e-36 155.2 193 44.6
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.1e-34 148.3 200 43.0
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 6.7e-34 147.9 154 51.3
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.3e-32 143.7 201 41.3
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 5.3e-31 138.3 142 51.4
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.9e-29 132.5 192 41.1
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 3.8e-29 132.1 149 53.0
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.4e-28 130.2 233 44.2
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.2e-28 128.6 141 61.7
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 6.1e-27 124.8 148 55.4
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.9e-25 119.8 202 42.1
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 5.7e-25 118.2 131 47.3
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 5.7e-25 118.2 145 47.6
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 7.4e-25 117.9 134 44.8
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.7e-24 116.7 121 55.4
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 1.7e-24 116.7 121 48.8
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 2.2e-24 116.3 129 50.4
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 2.2e-24 116.3 119 48.7
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 2.8e-24 115.9 123 56.1
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.8e-24 115.9 139 57.6
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 2.8e-24 115.9 121 51.2
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 3.7e-24 115.5 121 52.1
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 8.2e-24 114.4 193 45.6
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.4e-23 113.6 195 45.1
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 1.8e-23 113.2 119 58.0
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.1e-23 112.1 122 58.2
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 5.3e-23 111.7 139 42.4
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 5.3e-23 111.7 124 49.2
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 9.1e-23 110.9 141 46.1
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 9.1e-23 110.9 124 46.8
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 1.2e-22 110.5 124 48.4
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.5e-22 110.2 122 47.5
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-22 109.8 127 47.2
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 2.0e-22 109.8 115 50.4
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 3.4e-22 109.0 126 48.4
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 5.9e-22 108.2 126 48.4
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.0e-21 107.5 123 45.5
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.0e-21 107.5 123 45.5
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 1.0e-21 107.5 120 46.7
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 1.3e-21 107.1 123 48.0
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.3e-21 107.1 128 46.1
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.7e-21 106.7 119 52.9
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.8e-21 105.5 128 45.3
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.8e-21 105.5 144 43.1
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.8e-21 105.5 160 38.8
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 5.0e-21 105.1 147 51.0
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 8.5e-21 104.4 125 45.6
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 8.5e-21 104.4 116 45.7
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 1.1e-20 104.0 119 43.7
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 1.1e-20 104.0 132 56.8
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.4e-20 103.6 182 38.5
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.4e-20 103.6 112 48.2
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.5e-20 102.8 148 49.3
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 2.5e-20 102.8 120 46.7
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 3.2e-20 102.4 117 43.6
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 4.2e-20 102.1 127 54.3
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 9.4e-20 100.9 122 45.1
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 9.4e-20 100.9 118 50.0
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.6e-19 100.1 182 37.4
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.6e-19 100.1 117 52.1
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.1e-19 99.8 130 43.8
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 2.1e-19 99.8 127 43.3
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 4.7e-19 98.6 171 44.4
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 7.9e-19 97.8 129 52.7
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 7.9e-19 97.8 131 49.6
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 1.0e-18 97.4 117 47.9
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.0e-18 97.4 119 46.2
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 1.4e-18 97.1 131 48.9
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.4e-18 97.1 131 48.9
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.4e-18 97.1 131 48.9
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.3e-18 96.3 137 45.3
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 2.3e-18 96.3 136 47.8
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 3.0e-18 95.9 148 48.0
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.9e-18 95.5 129 48.1
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 5.1e-18 95.1 151 43.0
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 6.7e-18 94.7 122 52.5
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 6.7e-18 94.7 122 52.5
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.5e-17 93.6 131 46.6
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-17 93.2 131 43.5
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 2.6e-17 92.8 138 37.7
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.6e-17 92.8 131 42.0
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.3e-17 92.4 136 48.5
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 7.4e-17 91.3 166 44.0
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 9.7e-17 90.9 126 52.4
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 2.2e-16 89.7 117 53.0
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 3.7e-16 89.0 129 45.7
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.1e-15 87.4 124 38.7
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.1e-15 87.4 133 37.6
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.4e-15 87.0 164 44.5
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 1.4e-15 87.0 154 35.7
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 1.8e-15 86.7 131 42.0
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 1.8e-15 86.7 167 37.7
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 1.8e-15 86.7 126 41.3
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.2e-14 84.0 129 47.3
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 2.0e-14 83.2 131 46.6
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 2.0e-14 83.2 147 42.9
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 2.0e-14 83.2 147 42.9
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 2.0e-14 83.2 147 42.9
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 2.0e-14 83.2 124 50.0
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 5.9e-14 81.6 146 42.5
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 5.9e-14 81.6 139 38.8
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 7.7e-14 81.3 146 41.8
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 7.7e-14 81.3 161 41.6
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 1.0e-13 80.9 169 39.6
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.7e-13 80.1 129 45.7
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 2.9e-13 79.3 109 53.2
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 3.8e-13 79.0 122 42.6
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 8.5e-13 77.8 163 41.1
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 8.5e-13 77.8 129 45.0
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 1.9e-12 76.6 142 40.8
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.5e-12 76.3 140 37.1
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 2.5e-12 76.3 121 39.7
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 3.2e-12 75.9 111 50.5
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 9.4e-12 74.3 157 31.8
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 2.1e-11 73.2 149 38.3
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 1.0e-10 70.9 121 38.8
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 3.0e-10 69.3 59 54.2
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 8.8e-10 67.8 143 32.9
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 4.4e-09 65.5 142 37.3
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 6.3e-08 61.6 159 31.4
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.0e-07 58.2 157 31.8
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 7.0e-07 58.2 131 38.9
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 2.6e-06 56.2 105 40.0


User provided reference genes

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