Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 0.0e+00 1209.5 616 100.0
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 0.0e+00 1203.3 616 99.4
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 0.0e+00 1158.3 615 95.3
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 0.0e+00 1107.8 614 92.7
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 0.0e+00 1105.5 599 94.2
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 0.0e+00 1100.1 615 92.0
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 0.0e+00 1090.5 601 92.8
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 0.0e+00 1085.9 615 90.4
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.8e-290 1001.5 614 81.4
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 4.5e-288 994.2 616 81.2
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 4.2e-286 987.6 615 81.1
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 3.7e-282 974.5 640 77.0
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 2.4e-281 971.8 615 80.7
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.5e-280 969.1 615 79.0
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 2.6e-280 968.4 615 79.7
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.7e-279 965.7 615 78.9
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.9e-279 964.9 615 78.5
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 2.9e-279 964.9 615 78.9
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 5.0e-279 964.1 615 78.0
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 8.5e-279 963.4 615 79.3
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 9.4e-278 959.9 616 78.7
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 1.6e-277 959.1 615 79.2
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 2.1e-277 958.7 616 77.8
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 3.6e-277 958.0 615 78.4
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 3.6e-277 958.0 615 78.4
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.8e-276 955.7 615 77.6
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 2.3e-276 955.3 615 78.5
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 5.1e-276 954.1 615 78.0
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 6.7e-276 953.7 615 77.4
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 2.0e-275 952.2 614 77.5
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 7.4e-275 950.3 654 74.6
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 7.4e-275 950.3 615 78.2
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 1.3e-274 949.5 615 77.2
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 2.2e-274 948.7 619 77.9
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 3.7e-274 948.0 616 77.3
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 4.8e-274 947.6 614 78.0
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 8.2e-274 946.8 615 76.7
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 1.8e-273 945.7 616 77.4
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.8e-273 945.7 614 77.5
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.0e-272 942.2 624 76.1
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 2.0e-272 942.2 614 76.9
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 4.5e-272 941.0 615 76.9
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 7.7e-272 940.3 616 77.3
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 7.2e-270 933.7 615 76.1
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 7.2e-270 933.7 608 76.2
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 7.2e-270 933.7 614 76.5
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.7e-269 931.0 625 75.4
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 4.4e-267 924.5 615 76.1
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 1.1e-265 919.8 615 75.3
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 1.8e-265 919.1 615 75.1
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 7.0e-265 917.1 610 74.9
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 9.1e-265 916.8 615 75.0
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.2e-264 916.4 610 74.8
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 1.5e-264 916.0 615 75.4
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 4.5e-264 914.4 614 75.1
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 4.5e-264 914.4 750 65.5
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 5.9e-264 914.1 610 74.9
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 7.7e-264 913.7 615 75.9
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 1.7e-263 912.5 615 75.1
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 3.8e-263 911.4 574 79.6
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 6.5e-263 910.6 615 75.0
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.1e-262 909.8 615 74.8
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.1e-262 909.8 615 74.8
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.1e-262 909.8 615 75.1
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 2.5e-262 908.7 642 71.7
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.2e-261 906.4 615 74.6
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.6e-261 906.0 616 74.7
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 4.7e-261 904.4 615 74.6
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 8.0e-261 903.7 681 69.3
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 8.0e-261 903.7 615 74.5
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 4.4e-259 897.9 648 71.3
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 9.7e-259 896.7 615 73.5
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 8.2e-258 893.6 628 72.1
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.2e-256 889.8 541 81.5
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.6e-256 888.6 614 73.1
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 3.5e-256 888.3 615 73.2
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.7e-255 885.9 620 72.4
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 2.9e-255 885.2 613 73.4
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.9e-254 882.5 620 71.9
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 5.2e-252 874.4 615 72.7
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 7.0e-249 864.0 631 70.5
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 5.0e-247 857.8 615 70.9
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 2.5e-246 855.5 582 74.4
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 5.5e-246 854.4 637 69.2
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.2e-245 853.2 615 69.4
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 2.7e-240 835.5 516 79.7
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.7e-240 835.5 516 79.8
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 4.3e-238 828.2 617 67.4
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 9.5e-230 800.4 615 67.5
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 2.2e-226 789.3 574 70.4
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 7.0e-225 784.3 620 66.3
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 7.0e-225 784.3 618 64.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.3e-220 769.2 511 76.5
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.3e-220 769.2 468 81.0
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.0e-207 727.2 529 72.2
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 1.7e-202 709.9 617 57.2
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 4.9e-202 708.4 443 79.2
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.4e-201 706.1 557 66.8
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 9.3e-201 704.1 621 57.5
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 1.4e-188 663.7 616 55.2
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.8e-172 610.1 646 49.1
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 8.5e-154 548.1 618 48.4
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 3.2e-153 546.2 358 77.7
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 3.8e-146 522.7 359 75.2
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 4.2e-145 519.2 616 45.8
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 3.6e-144 516.2 484 60.3
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.5e-142 510.8 339 77.3
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 3.8e-138 496.1 364 68.1
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 8.0e-136 488.4 388 65.7
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 6.4e-117 425.6 510 44.9
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.1e-116 424.9 597 43.9
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.0e-107 394.0 374 59.6
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.7e-99 367.1 282 68.4
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-94 351.7 454 48.7
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.4e-71 274.2 175 78.9
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.3e-69 268.5 171 78.9
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.6e-67 261.5 186 68.3
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.8e-56 223.4 133 81.2
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 1.4e-47 195.3 117 79.5
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.7e-45 188.3 150 62.7
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.9e-45 187.6 140 69.3
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-44 185.7 122 76.2
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 9.4e-44 182.6 145 62.1
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.2e-43 182.2 149 64.4
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.6e-43 181.8 105 79.0
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 3.0e-42 177.6 106 78.3
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.6e-35 155.2 178 48.9
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 5.3e-31 140.2 86 82.6
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 7.0e-31 139.8 100 74.0
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 4.7e-27 127.1 59 96.6
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 4.7e-27 127.1 59 96.6
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 3.0e-26 124.4 102 63.7
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 2.2e-24 118.2 107 52.3
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.4e-23 114.8 84 70.2
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.7e-21 108.6 58 81.0
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 2.5e-20 104.8 78 61.5
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 2.7e-19 101.3 117 58.1
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 8.0e-19 99.8 59 72.9
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 3.4e-17 94.4 76 67.1
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 1.7e-16 92.0 69 58.0
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 2.4e-15 88.2 50 78.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 6.5e-13 80.1 71 57.7
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 4.7e-11 73.9 80 48.8
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 6.8e-10 70.1 51 54.9
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.5e-09 68.9 46 78.3
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 4.4e-09 67.4 54 57.4
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 4.9e-08 63.9 38 71.1


User provided reference genes

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