Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 6.7e-128 460.7 231 100.0
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.8e-126 454.5 231 98.7
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 4.8e-126 454.5 231 98.7
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 2.5e-114 415.6 231 90.0
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.0e-107 393.7 250 79.2
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.1e-105 386.0 250 79.6
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.3e-104 382.5 250 79.2
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 5.3e-101 371.3 268 74.3
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.3e-95 352.1 246 74.4
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 3.7e-94 348.6 247 72.9
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.0e-93 344.4 254 70.1
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.7e-92 340.9 240 72.5
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.2e-89 333.6 246 69.5
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 1.4e-88 330.1 250 66.0
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 2.3e-88 329.3 255 67.5
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 3.0e-88 328.9 270 63.3
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.0e-88 328.6 229 72.9
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.8e-88 327.8 251 66.1
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.5e-87 326.6 251 65.7
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 2.2e-86 322.8 259 65.3
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 4.8e-86 321.6 241 67.6
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 6.3e-86 321.2 236 69.1
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.1e-85 320.5 236 67.8
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.4e-85 320.1 254 63.0
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.8e-85 319.7 243 68.3
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 4.1e-85 318.5 235 67.7
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 4.1e-85 318.5 232 69.0
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 7.0e-85 317.8 231 68.0
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 9.1e-85 317.4 240 66.2
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 1.2e-84 317.0 235 66.8
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 2.7e-84 315.8 187 79.7
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 2.7e-84 315.8 231 66.2
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 2.7e-84 315.8 247 67.2
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 2.7e-84 315.8 248 64.9
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 3.5e-84 315.5 253 64.8
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 3.5e-84 315.5 289 58.8
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 4.5e-84 315.1 235 68.1
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.5e-84 315.1 250 65.6
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.5e-84 315.1 237 68.4
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 4.5e-84 315.1 253 65.6
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 4.5e-84 315.1 241 65.6
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 5.9e-84 314.7 229 70.3
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 5.9e-84 314.7 251 66.1
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 5.9e-84 314.7 186 81.7
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.0e-83 313.9 250 64.8
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.3e-83 313.5 237 67.9
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.3e-83 312.8 238 68.5
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 6.5e-83 311.2 233 67.0
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 6.5e-83 311.2 233 67.0
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 8.6e-83 310.8 255 63.9
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 5.5e-82 308.1 249 63.1
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 7.2e-82 307.8 184 78.3
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 9.5e-82 307.4 243 67.1
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.2e-81 307.0 243 63.8
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 2.8e-81 305.8 243 67.1
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 3.6e-81 305.4 242 65.7
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 3.6e-81 305.4 251 63.7
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 6.1e-81 304.7 249 64.7
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 6.1e-81 304.7 269 60.6
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 8.0e-81 304.3 249 62.7
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 8.0e-81 304.3 241 65.1
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.0e-80 303.9 248 61.7
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.0e-80 303.9 233 64.4
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.8e-80 303.1 188 79.3
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.8e-80 303.1 188 79.3
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 1.8e-80 303.1 254 62.2
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 5.2e-80 301.6 250 64.0
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 8.9e-80 300.8 248 64.9
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 3.4e-79 298.9 190 76.3
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 1.3e-78 297.0 247 61.5
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.7e-78 296.6 232 64.2
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 2.8e-78 295.8 240 64.2
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.8e-78 295.8 200 72.0
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 4.9e-78 295.0 230 62.2
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 6.3e-78 294.7 253 60.5
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.4e-77 293.5 230 61.7
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 1.4e-77 293.5 250 61.6
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 2.4e-77 292.7 172 82.0
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 5.4e-77 291.6 247 59.1
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 7.0e-77 291.2 234 62.4
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 9.2e-77 290.8 229 62.4
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 9.2e-77 290.8 234 61.1
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 2.7e-76 289.3 247 61.5
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.5e-76 288.9 230 62.6
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 3.5e-76 288.9 227 61.7
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 3.5e-76 288.9 247 60.7
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 1.3e-75 287.0 230 62.2
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.3e-75 286.2 242 62.4
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 6.6e-75 284.6 234 60.3
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 3.3e-74 282.3 230 59.1
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 4.3e-74 282.0 232 61.6
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 4.3e-74 282.0 346 49.1
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 5.6e-74 281.6 230 61.7
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.8e-73 279.3 248 57.7
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 8.0e-73 277.7 252 57.1
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 5.2e-72 275.0 250 56.0
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 2.6e-71 272.7 167 77.2
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 7.5e-71 271.2 241 57.7
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.2e-68 263.8 246 55.3
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 8.6e-67 257.7 146 83.6
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 8.6e-67 257.7 211 63.0
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.9e-66 256.5 185 66.5
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 1.4e-64 250.4 186 65.1
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.4e-64 250.4 251 53.8
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 8.9e-64 247.7 193 61.7
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 3.4e-63 245.7 186 63.4
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 5.8e-63 245.0 233 52.4
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 7.5e-63 244.6 247 57.1
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 7.5e-63 244.6 202 62.9
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 8.3e-62 241.1 226 54.0
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 3.2e-61 239.2 167 68.3
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 7.0e-61 238.0 232 56.9
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 6.0e-60 235.0 245 51.8
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.0e-59 232.6 171 67.3
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.4e-55 218.8 186 58.1
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.7e-54 216.9 162 66.0
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.6e-52 210.3 188 60.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.5e-52 209.1 182 58.2
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 3.0e-51 206.1 177 61.6
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 3.9e-51 205.7 185 57.3
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 6.6e-51 204.9 171 64.9
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 7.3e-50 201.4 137 73.0
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 8.4e-46 188.0 139 71.2
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.9e-45 186.8 196 46.9
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.9e-45 186.8 154 62.3
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.9e-45 186.8 156 62.2
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 2.4e-45 186.4 190 50.0
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 2.8e-41 172.9 146 65.1
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.1e-40 171.0 101 83.2
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 1.5e-39 167.2 157 56.1
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.3e-38 164.1 118 71.2
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 7.1e-37 158.3 139 60.4
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.0e-35 154.5 168 54.8
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 1.8e-32 143.7 131 57.3
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.2e-30 136.7 182 43.4
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.9e-30 136.3 127 53.5
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 2.4e-29 133.3 95 65.3
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 3.9e-27 125.9 119 54.6
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 1.1e-26 124.4 120 58.3
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 2.5e-26 123.2 118 52.5
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.8e-24 117.1 185 37.3
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 9.0e-24 114.8 72 75.0
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 2.0e-23 113.6 134 46.3
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 2.0e-23 113.6 134 46.3
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 9.3e-21 104.8 67 67.2
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 2.3e-19 100.1 70 68.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.5e-18 97.4 69 72.5
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 6.2e-17 92.0 65 66.2
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 3.4e-15 86.3 52 80.8
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 7.9e-12 75.1 105 43.8
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.0e-11 73.2 85 51.8
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.7e-11 71.6 84 50.0
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.2e-09 67.0 39 82.1
PGSC0003DMG400043354 Solanum tuberosum HOM05D004791 ORTHO05D005637 6.3e-09 65.5 79 51.9
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 5.0e-06 55.8 34 73.5


User provided reference genes

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